Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_C09
         (1286 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    27   0.23 
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    25   0.92 

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 27.5 bits (58), Expect = 0.23
 Identities = 20/67 (29%), Positives = 27/67 (40%)
 Frame = +1

Query: 703 FLEKVFLTDACLLYAPSQIALAAVLHAASKEQENLDSYVTDILFRDAGRDKLAILIEAVR 882
           F E    +  C LYA   IAL  V   A  + ENL   V   LF         +   +V 
Sbjct: 426 FNENTIHSKLCKLYATFLIALKLVWIVALFKNENLSEMVKQFLFTQKFTFVAGLATLSVL 485

Query: 883 KIRSLVK 903
            + S++K
Sbjct: 486 NLLSVIK 492


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 25.4 bits (53), Expect = 0.92
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 695 IPLRRRSGLANEHLVLMSIRNPSTGLK 615
           +P+R  S    ++++L +++NPSTG K
Sbjct: 663 LPVRNVSVDVRDNILLKNLQNPSTGSK 689


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,016
Number of Sequences: 336
Number of extensions: 4616
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 37918809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)