Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_C09
(1286 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||... 84 5e-17
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|... 58 3e-09
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2... 42 1e-04
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p... 32 0.15
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 28 3.2
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 27 4.2
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 27 7.4
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe... 27 7.4
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 26 9.8
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 26 9.8
>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 322
Score = 83.8 bits (198), Expect = 5e-17
Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 3/171 (1%)
Frame = +1
Query: 277 LSPDEERQLLKQYELHLKEFCKRFTPPMPKGVVGTAFHYFKRFYLYNSTMDYHPKEILAT 456
L+ +EE +L+ Y L + +P + TA +FKRFYL NS M+Y PK I T
Sbjct: 61 LTVEEELELVNYYSFQLNALSSALS--LPTHIRSTAILFFKRFYLINSVMEYSPKIISFT 118
Query: 457 CVYLACKVEEFNVSIGQFVANIKGDREKASDIIXXXXXXXXXXXXYHLTIHNPFRPVEGF 636
++LA K + +SI QF N+ + + + + L + PFRP++GF
Sbjct: 119 SLFLATKCNDHYISIEQFCKNMP---KTTPEEVLEYEFNVCQSLKWDLYVWLPFRPLQGF 175
Query: 637 LIDIKTRCSLANPERLRSGID---EFLEKVFLTDACLLYAPSQIALAAVLH 780
L+D +T E+ D +FL + +D L++PS IAL A+ H
Sbjct: 176 LLDCQTVLPKVAVEKFYECHDLSKKFLIETLHSDIYFLHSPSIIALGAIYH 226
>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 342
Score = 57.6 bits (133), Expect = 3e-09
Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 15/171 (8%)
Frame = +1
Query: 358 MPKGVVGTAFHYFKRFYLYNSTMDYHPKEILATCVYLACKVEEFNVSIGQFVANIKGDRE 537
+P+ + TA YF RFYL S +YH E+ ATC++LA KVE+ + V N +
Sbjct: 60 LPQTALATANIYFHRFYLRFSLKNYHYYEVAATCIFLATKVEDSVRKLRDIVINCAKVAQ 119
Query: 538 KAS---------------DIIXXXXXXXXXXXXYHLTIHNPFRPVEGFLIDIKTRCSLAN 672
K S D+I + T+ +P+ V F+ + +A+
Sbjct: 120 KNSNVLVDEQTKEYWRWRDVILYTEEVLLEALCFDFTVEHPYPYVLSFI-----KKFVAD 174
Query: 673 PERLRSGIDEFLEKVFLTDACLLYAPSQIALAAVLHAASKEQENLDSYVTD 825
+ + ++ + ACLLY+P IA AA A K + NL S TD
Sbjct: 175 DKNVTKVAWTYINDSTRSIACLLYSPKTIAAAAFQFALEKNEINL-STTTD 224
>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
2|||Manual
Length = 228
Score = 42.3 bits (95), Expect = 1e-04
Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 6/164 (3%)
Frame = +1
Query: 370 VVGTAFHYFKRFYLY-NSTMDYHPKEILATCVYLACKVEEFNVSIGQFVANIKGD----R 534
V+ TA +R+ L N + + ++ATC+YL+CKVEE V I + + N D +
Sbjct: 52 VLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHI-RTICNEANDLWSLK 110
Query: 535 EKAS-DIIXXXXXXXXXXXXYHLTIHNPFRPVEGFLIDIKTRCSLANPERLRSGIDEFLE 711
K S I L +H+P+ +E D + N ++L +
Sbjct: 111 VKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHD-----GIINQKQLEFAW-SIVN 164
Query: 712 KVFLTDACLLYAPSQIALAAVLHAASKEQENLDSYVTDILFRDA 843
+ + CL+ P Q+A AA+L + ++ + + I DA
Sbjct: 165 DSYASSLCLMAHPHQLAYAALLISCCNDENTIPKLLDLIKSTDA 208
>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 340
Score = 32.3 bits (70), Expect = 0.15
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +1
Query: 292 ERQLLKQYELHLKEFCKRFTPPMPKGVVGTAFHYFKRFYLYNSTMDYHPKEILATCVYLA 471
E+ LL Y+ + C + +PK + TA +KR + + + I+A C+Y+A
Sbjct: 115 EKNLLTAYK-EIGAMCDAIS--LPKVIADTAKQLYKRVDDHKALKGKSSQSIIAACIYIA 171
Query: 472 CK 477
C+
Sbjct: 172 CR 173
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.9 bits (59), Expect = 3.2
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = +1
Query: 646 IKTRCSLANPERLRSGIDEFLE----KVFLTDACLLYAPSQIALAAVLHAASKEQENLDS 813
+ R S ANP++L++ IDE+++ ++ T+A + + + SK LDS
Sbjct: 85 VLARISGANPQKLKAAIDEYIQPLISQISSTNASVETQVNSVQTTNTTSNTSKAPNGLDS 144
Query: 814 YVTDIL 831
+ + L
Sbjct: 145 ELNERL 150
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 27.5 bits (58), Expect = 4.2
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +1
Query: 787 SKEQENLDSYVTDILFRDAGRDKLAILIEAVRKIRSLVKMVEAPARERVRLIEKKLDKCR 966
S +QENL+ VT+ + I + ++K+R + V+ R I+ +L K
Sbjct: 14 SVDQENLERDVTNTASEYIAHESREIEKKRLQKVRKEISSVKEKIRRLDERIDSRLTKIS 73
Query: 967 NQEN 978
+EN
Sbjct: 74 VKEN 77
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 26.6 bits (56), Expect = 7.4
Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = +1
Query: 286 DEERQLLKQYELHL--KEFCKRFTPPMPKGVVGTAFHYFK 399
+++ +++ +EL L KE+C++ T P+ ++ + HYFK
Sbjct: 1000 EKKPKVIIYFELVLTTKEYCRQITEIQPEWLLEISPHYFK 1039
>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 7.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 286 DEERQLLKQYELHLKEFCKRFTPPMPKGVVGTAFHYFKRFYLYNST 423
D+E+ L KQ + L++ C+RF K ++ F K F NST
Sbjct: 124 DDEKFLFKQ-GVSLED-CQRFARENAKDIIAVGFDPKKTFIFMNST 167
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 879 YSFNKYRQFITARISEEYVCYVAIQVLL 796
Y+FN+ F T R +E +CYV+ + L
Sbjct: 198 YAFNRTADFETVREMKEKLCYVSYDLEL 225
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 9.8
Identities = 18/80 (22%), Positives = 33/80 (41%)
Frame = -1
Query: 947 FSISRTRSLAGASTIFTNDRIFLTASISIANLSRPASLKSMSVT*LSKFSCSLLAAWSTA 768
FS+ R + S N++ F+ I I+ L RP + +++F +L A W T
Sbjct: 250 FSLLRPGLITVKSVYAINNQTFIVPLIQISGLKRPPQATVVIGRQITRFG-TLTARWKTG 308
Query: 767 AKAICDGAYNKHASVKNTFS 708
++ ++FS
Sbjct: 309 VWSLGSWGIASPRGANSSFS 328
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,150,308
Number of Sequences: 5004
Number of extensions: 80415
Number of successful extensions: 224
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 701473834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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