Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_C09
(1286 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1061 + 30037069-30037074,30037638-30037715,30038687-300387... 50 4e-06
02_03_0032 + 14112354-14112417,14112471-14112549,14114435-141145... 42 0.001
11_01_0357 + 2715271-2715509,2716200-2716281,2717117-2717251,271... 33 0.37
01_04_0064 - 15600467-15600528,15600606-15600647,15600732-156011... 33 0.49
01_06_0763 + 31800556-31800618,31800659-31800802,31800859-318009... 31 2.6
01_06_0221 - 27653591-27653724,27654270-27654473,27655216-276553... 31 2.6
05_01_0054 + 379974-380215,380343-380556,381603-381892,382384-38... 30 3.4
02_01_0262 - 1734447-1735090,1735219-1735367,1735458-1735633,173... 30 4.5
04_04_1249 - 32067644-32067787,32068245-32068346,32068415-320684... 29 6.0
>03_05_1061 +
30037069-30037074,30037638-30037715,30038687-30038745,
30038823-30038907,30039206-30039294,30039384-30039446,
30039635-30039707,30040033-30040086,30040224-30040265,
30040609-30040674
Length = 204
Score = 50.0 bits (114), Expect = 4e-06
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Frame = +1
Query: 706 LEKVFLTDACLLYAPSQIALAAVLHAASKEQE--NLDSYVTDILFRDAGRDKLAILIEAV 879
++K+ LTDA LLY P Q+ALAA LH ++ + N + Y+ + R + + ++
Sbjct: 12 VDKMMLTDAPLLYTPGQLALAA-LHKSNDMHKILNFERYLESVFSRQHSDCPIEQFVGSI 70
Query: 880 RKIRSLVKMVEAPARERVRLIEKKLDKC 963
I LV+ ++ P + +R I++KL C
Sbjct: 71 NMINYLVEQLKIPTPKDMRHIDRKLKHC 98
>02_03_0032 +
14112354-14112417,14112471-14112549,14114435-14114551,
14114721-14114802,14115734-14115868,14115948-14116123,
14116219-14116370,14116433-14117622
Length = 664
Score = 41.5 bits (93), Expect = 0.001
Identities = 41/164 (25%), Positives = 64/164 (39%), Gaps = 17/164 (10%)
Frame = +1
Query: 358 MPKGVVGTAFHYFKRFYLYNSTMDYHPKEILATCVYLACKVEEFNVSIGQFVANIKGDR- 534
+P+ + TA + RFYLY S + I C++LA KVE+ + Q + G
Sbjct: 87 LPQMTIATAIMFCHRFYLYQSLAKNGWQTIATVCIFLASKVEDTPCPLDQVIRVAYGTMY 146
Query: 535 ----------------EKASDIIXXXXXXXXXXXXYHLTIHNPFRPVEGFLIDIKTRCSL 666
EK +I + I +P+RP L+D + +
Sbjct: 147 RRDPATARRIHQKDVFEKQKALILTGERLVLTTVRFDFNIQHPYRP----LLDAMEKLGI 202
Query: 667 ANPERLRSGIDEFLEKVFLTDACLLYAPSQIALAAVLHAASKEQ 798
+ E ++ F+ T CL Y P IA A L+ A+K Q
Sbjct: 203 SQKE-VKQVAWNFVNDWLKTTLCLQYKPQYIA-AGSLYLAAKFQ 244
>11_01_0357 +
2715271-2715509,2716200-2716281,2717117-2717251,
2717428-2717457,2717486-2717661,2717743-2717894,
2718395-2719083
Length = 500
Score = 33.5 bits (73), Expect = 0.37
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = +1
Query: 289 EERQLLKQYELHLKEFCKRFTPPMPKGVVGTAFHYFKRFYLYNSTMDYHPKEILATCVYL 468
+E L K Y L++ R +P+ + TA + RF+L S + I C++L
Sbjct: 59 KESYLRKSYCTFLQDLGMRLK--VPQVTIATAIVFCHRFFLRQSHAKNDRRTIATVCMFL 116
Query: 469 ACKVEE 486
A KVEE
Sbjct: 117 AGKVEE 122
>01_04_0064 -
15600467-15600528,15600606-15600647,15600732-15601107,
15601186-15601447,15602992-15603158,15603344-15603484,
15603575-15603643
Length = 372
Score = 33.1 bits (72), Expect = 0.49
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 373 VGTAFHYFKRFYLYNSTMDYHPKEILATCVYLACKVEE 486
+ TA F RFY S + + K + A+CV+LA K+EE
Sbjct: 1 MATAQVLFHRFYCKKSFVRFSVKRVAASCVWLAGKLEE 38
>01_06_0763 +
31800556-31800618,31800659-31800802,31800859-31800980,
31801742-31801807,31801891-31801998,31802226-31802292,
31802716-31802800,31803169-31803329,31803490-31803591,
31803807-31804029,31804155-31804300
Length = 428
Score = 30.7 bits (66), Expect = 2.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 439 KEILATCVYLACKVEEFNVSIGQFVANIKGDREKASDII 555
K +LA V CK FN+S V+ +GD EK ++
Sbjct: 190 KTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVL 228
>01_06_0221 -
27653591-27653724,27654270-27654473,27655216-27655315,
27655728-27655888,27656846-27656930,27657548-27657614,
27658434-27658541,27658639-27658704,27659341-27659387,
27659497-27659691,27659833-27659877
Length = 403
Score = 30.7 bits (66), Expect = 2.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 439 KEILATCVYLACKVEEFNVSIGQFVANIKGDREKASDII 555
K +LA V CK FN+S V+ +GD EK ++
Sbjct: 176 KTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVL 214
>05_01_0054 +
379974-380215,380343-380556,381603-381892,382384-382560,
382705-383481,383572-383645,383757-383819,383919-384007,
384106-384201,384319-384978,385613-385687,386422-386492,
386578-386635,386900-387104,387379-387869
Length = 1193
Score = 30.3 bits (65), Expect = 3.4
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Frame = +1
Query: 871 EAVRKIRSLVKMVEAPARERVRLIE---KKLDKCRNQEN 978
+ +R+IRS V + ARE+VR ++ +K+D+CRN N
Sbjct: 64 QELRRIRSSVADSSSKAREKVRSMQEAVQKVDRCRNVLN 102
>02_01_0262 -
1734447-1735090,1735219-1735367,1735458-1735633,
1735719-1735853,1737039-1737120,1737307-1737461
Length = 446
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 358 MPKGVVGTAFHYFKRFYLYNSTMDYHPKEILATCVYLACKVEE 486
+P+ + TA RFYL S + + CV+LA K+E+
Sbjct: 52 LPQVTIATATLLCHRFYLRQSHAKNEWQTVATVCVFLASKIED 94
>04_04_1249 -
32067644-32067787,32068245-32068346,32068415-32068438,
32068439-32068543,32068625-32068729,32068885-32068966,
32069254-32069456,32069534-32069692,32070045-32070154,
32070264-32070405,32070544-32070690,32070773-32070847,
32070923-32071132,32071223-32071426,32071514-32071633,
32071743-32071852,32072033-32072177,32072266-32072499,
32072611-32072646
Length = 818
Score = 29.5 bits (63), Expect = 6.0
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +1
Query: 475 KVEEFNVSIGQFVANIKGDREKASDII 555
+++E+N S+ Q+ +N++ D K+ DII
Sbjct: 225 RLQEYNTSLQQYNSNLQADASKSGDII 251
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,074,048
Number of Sequences: 37544
Number of extensions: 456269
Number of successful extensions: 1010
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4004040288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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