Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_C09
(1286 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006790-12|AAF60728.2| 332|Caenorhabditis elegans Cyclin h pro... 123 3e-28
AF125448-7|AAD12812.2| 302|Caenorhabditis elegans Cyclin c prot... 56 4e-08
Z83226-1|CAB05724.2| 252|Caenorhabditis elegans Hypothetical pr... 39 0.009
Z78012-6|CAB01416.1| 480|Caenorhabditis elegans Hypothetical pr... 33 0.44
AY557405-1|AAS64750.1| 480|Caenorhabditis elegans cyclin L prot... 33 0.44
U29536-2|AAA68790.1| 759|Caenorhabditis elegans Brf (transcript... 31 1.3
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 31 2.3
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 31 2.3
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 31 2.3
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 31 2.3
L23648-3|AAN63386.1| 438|Caenorhabditis elegans Cyclin t protei... 29 5.4
L23648-1|AAA28034.1| 468|Caenorhabditis elegans Cyclin t protei... 29 5.4
U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical pr... 29 9.4
>AC006790-12|AAF60728.2| 332|Caenorhabditis elegans Cyclin h protein
1 protein.
Length = 332
Score = 123 bits (296), Expect = 3e-28
Identities = 87/290 (30%), Positives = 145/290 (50%), Gaps = 14/290 (4%)
Frame = +1
Query: 187 ELARLREKHNYFFYARQNSHIDEQQRFTYFLSPDEERQLLKQYELHLKEFCKRFTPPMPK 366
+LA +R + N F + S + + F++P+EE ++ + E +F +F P +
Sbjct: 17 KLAAMRLEINIKFRQKYES-VMQPDELELFVTPEEELRMQRSIEDAALKFADKFRPHIWP 75
Query: 367 GVVGTAFHYFKRFYLYNSTMDYHPKEILATCVYLACKVEEFNVSIGQFVANIK-GDREKA 543
V TA +FKR +L D + ++ C YLA K++EF ++I FV N+ G+ +
Sbjct: 76 SVKWTALAFFKRAFLVWVPSDTSIRMVMMACFYLAMKIDEFYITIEDFVKNMNVGEPRQN 135
Query: 544 SDIIXXXXXXXXXXXXYHLTIHNPFRPVEGFLIDIKTRCSLAN--PERLRSGIDEFLEKV 717
++ I Y+LT+H P+RP EG L+D+KTR L N E +R F +
Sbjct: 136 AERILKLEPELMKILDYNLTVHCPYRPYEGHLMDMKTRMLLLNFDLESIRRDSMRFFQNA 195
Query: 718 FLTDACLLYAPSQIALAAV---LHAASKEQENLDSYVTDIL--------FRDAGRDKLAI 864
TD LLY PSQIALAA+ LHA K E L ++ ++ RDA + L
Sbjct: 196 LQTDVLLLYPPSQIALAAINFGLHAQGKSDEILREFLRKLIGIEEDSWAHRDARPEDLEK 255
Query: 865 LIEAVRKIRSLVKMVEAPARERVRLIEKKLDKCRNQENXLTXRLQASDEK 1014
L + V ++ +++ V+ R V + E++ + ++Q + + A DE+
Sbjct: 256 LEKTVTRVNQIMREVD---RNFVAVTEQERENHKSQLARIQALIPALDER 302
>AF125448-7|AAD12812.2| 302|Caenorhabditis elegans Cyclin c protein
1 protein.
Length = 302
Score = 56.4 bits (130), Expect = 4e-08
Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 22/223 (9%)
Frame = +1
Query: 370 VVGTAFHYFKRFYLYNSTMDYHPKEILATCVYLACKVEEF-NVSIGQFVANIK------- 525
V+ TA YFKRFYL S D P + +T ++LACKVEE +S+ F+ N
Sbjct: 70 VIATAIIYFKRFYLRQSFRDMCPFLVASTALFLACKVEEHTTLSVSSFLKNTAIVLPKRW 129
Query: 526 ----GDREKASDIIXXXXXXXXXXXXYHLTIHNPFRPVEGFLIDIK---TRCSLAN-PER 681
+ ++ L +H+ RP+ L D+K + ++AN P +
Sbjct: 130 GVTFETTSTKNGVVYDSEFILVEILDCCLVVHHASRPMFELLEDLKQFTQQSTIANQPIK 189
Query: 682 LRSGIDEFLEKV----FLTDACLLYAPSQIALAAVLHAAS--KEQENLDSYVTDILFRDA 843
I+ +KV D L++ P I L++++ A E L++++ ++ D
Sbjct: 190 DLEAIEAQCQKVANDSLRCDVSLIFPPHVIGLSSIMVAMELMGRGEELEAWLVEV---DT 246
Query: 844 GRDKLAILIEAVRKIRSLVKMVEAPARERVRLIEKKLDKCRNQ 972
+K+ +E + K+ +L K + +E V+ + KL K Q
Sbjct: 247 DFEKVTDCVEQIYKMYTLWKSFD--EKEEVKKLMAKLPKPNQQ 287
>Z83226-1|CAB05724.2| 252|Caenorhabditis elegans Hypothetical
protein F43D2.1 protein.
Length = 252
Score = 38.7 bits (86), Expect = 0.009
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +1
Query: 361 PKGVVGTAFHYFKRFYLYNSTMDYHPKEILATCVYLACKVEEF 489
P+ +G A YF RFY+ +S + + +C++LA KVE+F
Sbjct: 48 PRPTIGVAAVYFHRFYMIHSFQSFSREVTALSCLFLAGKVEDF 90
>Z78012-6|CAB01416.1| 480|Caenorhabditis elegans Hypothetical
protein C52E4.6a protein.
Length = 480
Score = 33.1 bits (72), Expect = 0.44
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 358 MPKGVVGTAFHYFKRFYLYNSTMDYHPKEILATCVYLACKVEE 486
+P+ T F+R+Y S + YH + + C+ LA K+EE
Sbjct: 122 LPQTAAATGQILFQRYYYQKSFVRYHFEHAVQACLLLASKIEE 164
>AY557405-1|AAS64750.1| 480|Caenorhabditis elegans cyclin L
protein.
Length = 480
Score = 33.1 bits (72), Expect = 0.44
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 358 MPKGVVGTAFHYFKRFYLYNSTMDYHPKEILATCVYLACKVEE 486
+P+ T F+R+Y S + YH + + C+ LA K+EE
Sbjct: 122 LPQTAAATGQILFQRYYYQKSFVRYHFEHAVQACLLLASKIEE 164
>U29536-2|AAA68790.1| 759|Caenorhabditis elegans Brf (transcription
factor) homologprotein 1 protein.
Length = 759
Score = 31.5 bits (68), Expect = 1.3
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 373 VGTAFHYFKRFYLYNSTMDYHPKEILATCVYLACKVE 483
+ TAF+++K N T + ++A C+Y+ C++E
Sbjct: 102 MNTAFNFYKMCVSRNLTRGRNRSSVVAVCMYITCRLE 138
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
F53B7.5b protein.
Length = 2892
Score = 30.7 bits (66), Expect = 2.3
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = -1
Query: 881 LTASISIANLSRPASLKSMSVT*LSKFSCSLLAAWSTAAKAICD----GAYNKHASVKNT 714
+TA+ + L+ SL S + F+C+ A+W TAA I D G YN S T
Sbjct: 1324 ITANERVTLLAATTSLVSGVGSVSFNFTCNSAASWMTAAGTIVDSVACGRYNLTTSTPTT 1383
Query: 713 FSRNSSIP 690
+ S+ P
Sbjct: 1384 TTITSTSP 1391
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
F53B7.5a protein.
Length = 3095
Score = 30.7 bits (66), Expect = 2.3
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = -1
Query: 881 LTASISIANLSRPASLKSMSVT*LSKFSCSLLAAWSTAAKAICD----GAYNKHASVKNT 714
+TA+ + L+ SL S + F+C+ A+W TAA I D G YN S T
Sbjct: 1324 ITANERVTLLAATTSLVSGVGSVSFNFTCNSAASWMTAAGTIVDSVACGRYNLTTSTPTT 1383
Query: 713 FSRNSSIP 690
+ S+ P
Sbjct: 1384 TTITSTSP 1391
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 30.7 bits (66), Expect = 2.3
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = -1
Query: 881 LTASISIANLSRPASLKSMSVT*LSKFSCSLLAAWSTAAKAICD----GAYNKHASVKNT 714
+TA+ + L+ SL S + F+C+ A+W TAA I D G YN S T
Sbjct: 1324 ITANERVTLLAATTSLVSGVGSVSFNFTCNSAASWMTAAGTIVDSVACGRYNLTTSTPTT 1383
Query: 713 FSRNSSIP 690
+ S+ P
Sbjct: 1384 TTITSTSP 1391
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 30.7 bits (66), Expect = 2.3
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = -1
Query: 881 LTASISIANLSRPASLKSMSVT*LSKFSCSLLAAWSTAAKAICD----GAYNKHASVKNT 714
+TA+ + L+ SL S + F+C+ A+W TAA I D G YN S T
Sbjct: 1324 ITANERVTLLAATTSLVSGVGSVSFNFTCNSAASWMTAAGTIVDSVACGRYNLTTSTPTT 1383
Query: 713 FSRNSSIP 690
+ S+ P
Sbjct: 1384 TTITSTSP 1391
>L23648-3|AAN63386.1| 438|Caenorhabditis elegans Cyclin t protein
1.1, isoform b protein.
Length = 438
Score = 29.5 bits (63), Expect = 5.4
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 352 PPMPKGVVG--TAFHYFKRFYLYNSTMDYHPKEILATCVYLACKVEE 486
P M G G A + RFY +S Y +++ A CV+LA K +E
Sbjct: 66 PKMKIGHTGLCVAHTHMHRFYYLHSFKKYDYRDVGAACVFLAGKSQE 112
>L23648-1|AAA28034.1| 468|Caenorhabditis elegans Cyclin t protein
1.1, isoform a protein.
Length = 468
Score = 29.5 bits (63), Expect = 5.4
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 352 PPMPKGVVG--TAFHYFKRFYLYNSTMDYHPKEILATCVYLACKVEE 486
P M G G A + RFY +S Y +++ A CV+LA K +E
Sbjct: 66 PKMKIGHTGLCVAHTHMHRFYYLHSFKKYDYRDVGAACVFLAGKSQE 112
>U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical protein
R09H3.1 protein.
Length = 1073
Score = 28.7 bits (61), Expect = 9.4
Identities = 20/45 (44%), Positives = 25/45 (55%)
Frame = -2
Query: 832 RVCLLRSYPSSLVPYSLHGVPQLKQFVTEHTISTHQLRTPFLGTH 698
R C LRSYP +L+ YS G P LK + I T + + F GTH
Sbjct: 879 RFCPLRSYPDNLLQYSNIGFP-LKSPLFLTNIRT--VVSWFTGTH 920
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,695,432
Number of Sequences: 27780
Number of extensions: 440548
Number of successful extensions: 1163
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3599888010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -