Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_C08
         (1272 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    30   0.78 
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    30   0.78 
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy...    27   5.5  
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   7.3  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    26   9.7  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    26   9.7  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   9.7  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   9.7  

>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 709 NRHNNKYSYTSTSDDNLLKNIELFDKLSLRFSGRVLFIKDV 831
           + +NN  + T+T DD+ L  +EL + L L F  +  F K+V
Sbjct: 539 SNNNNNNNNTNTDDDDKLAYLELHEALKLAFLQQYDFSKNV 579


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 709 NRHNNKYSYTSTSDDNLLKNIELFDKLSLRFSGRVLFIKDV 831
           + +NN  + T+T DD+ L  +EL + L L F  +  F K+V
Sbjct: 539 SNNNNNNNNTNTDDDDKLAYLELHEALKLAFLQQYDFSKNV 579


>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 21/66 (31%), Positives = 30/66 (45%)
 Frame = +1

Query: 556 LIEELTESCLQALAKKEREAEPICRVPLITSQKEEQLLIMSTSEPVVKLLINRHNNKYSY 735
           LI+E T   L   AKK+RE +   +   +  Q+E Q     T E  + LL  +H      
Sbjct: 188 LIKEATAKKLSQQAKKQRELKKFGKQVQLAKQEERQREKKETLEK-INLLKRKHTG--GD 244

Query: 736 TSTSDD 753
            +T DD
Sbjct: 245 LTTEDD 250


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 26/98 (26%), Positives = 37/98 (37%)
 Frame = +1

Query: 481 LRDGTVALPDSYKEIMELLAEAKYFLIEELTESCLQALAKKEREAEPICRVPLITSQKEE 660
           L + TVA+   +K        +   LIE  + SC      KE E  P   + L   + +E
Sbjct: 221 LLNNTVAVKQDHKLSANTFLSSPVKLIERESNSCSTISINKEDEVVPKSPLSLDRKKVDE 280

Query: 661 QLLIMSTSEPVVKLLINRHNNKYSYTSTSDDNLLKNIE 774
                S ++   +  I     K S TS S D    N E
Sbjct: 281 VEEHSSIAKLDSEEKIRETKKKNSSTSLSPDPTSDNFE 318


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 875 EKNVLKSAALQLCMLQIKSILRLSSRRPGYMRKHWEFYFTK 997
           +K V+   A    + ++  IL   + +P Y    WE YFT+
Sbjct: 569 DKQVVDVVAPSFVIPRLDDILNKIADKPLYSPDDWELYFTR 609


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 522 LFITVG*RYCAVTKIIQNSTEMLPTTINQNP 430
           +++ +  +YC V K +++  EM P  + Q+P
Sbjct: 471 IYLNLNEQYCLVMKDLKDGIEMKPKWLTQSP 501


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 19/80 (23%), Positives = 30/80 (37%)
 Frame = +1

Query: 481  LRDGTVALPDSYKEIMELLAEAKYFLIEELTESCLQALAKKEREAEPICRVPLITSQKEE 660
            LRD    +P       E+         +  T S L+    +  +  P   VP+I  Q   
Sbjct: 920  LRDSMEQVPLENHREFEISDRVSELSFDSSTGSVLEIADTRRNQDAPEKHVPVIEIQSSR 979

Query: 661  QLLIMSTSEPVVKLLINRHN 720
              L  +     V+LLI+ H+
Sbjct: 980  PSLEKTDQSTPVELLIDSHS 999


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 439 IDRCGKHFGTILNYLRDGTVALPDSYKEIMELL 537
           +DR G+  GT++N + D +    DS  EI+++L
Sbjct: 534 LDRLGEDLGTVINQMNDFSKP-DDSISEIVKVL 565


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,275,768
Number of Sequences: 5004
Number of extensions: 84070
Number of successful extensions: 221
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 691537944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)