Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_C08
(1272 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0394 + 3073903-3073954,3074052-3074161,3074234-3074368,307... 73 5e-13
10_08_0144 - 15176059-15176112,15176375-15176455,15176711-151767... 58 1e-08
07_03_0093 + 13330867-13332312 46 6e-05
11_03_0014 - 8965966-8965989,8966788-8966920,8967447-8967529,896... 31 1.5
02_04_0590 - 24154366-24155742 31 1.5
06_03_0536 + 21906583-21908037 30 4.5
02_05_0833 + 32080845-32081118,32081483-32081663,32081825-320819... 29 5.9
04_04_1503 + 34031540-34031562,34031682-34032212,34032417-340325... 29 7.8
02_03_0065 - 14629676-14629804,14631119-14631247,14631383-146317... 29 7.8
02_01_0354 + 2551675-2551874,2552721-2552833,2552982-2553170,255... 29 7.8
>03_01_0394 +
3073903-3073954,3074052-3074161,3074234-3074368,
3074461-3074616,3074793-3074876,3075069-3075115,
3075305-3075378,3075634-3075692,3076149-3076208,
3076826-3076906,3077033-3077086
Length = 303
Score = 72.9 bits (171), Expect = 5e-13
Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 4/112 (3%)
Frame = +1
Query: 289 KGSPSQYVKLNVGGTLFYTTIGTLTKSD--NMLRTMFSGRMEVLTDSE-GWILIDRCGKH 459
+ S S V LN+GG + TT+ TLT+ + +ML MFSGR + + G + +DR GKH
Sbjct: 6 ESSSSSPVLLNIGGKRYATTVETLTQREPSSMLAAMFSGRHTLPRHPDTGMVFVDRDGKH 65
Query: 460 FGTILNYLRDGTVALPD-SYKEIMELLAEAKYFLIEELTESCLQALAKKERE 612
F +LN+LRDG A+PD S E +LL EA+Y+ + L + L K E
Sbjct: 66 FRHVLNWLRDG--AVPDMSESEYQQLLREAEYYQLLGLADCINDRLGWKNDE 115
>10_08_0144 -
15176059-15176112,15176375-15176455,15176711-15176770,
15177220-15177278,15177412-15177485,15177595-15177641,
15177852-15177935,15178051-15178212,15178264-15178467,
15178541-15178647,15178746-15178773
Length = 319
Score = 58.0 bits (134), Expect = 1e-08
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Frame = +1
Query: 310 VKLNVGGTLFYTTIGTLTKSD--NMLRTMFSGRME--VLTDSEGWILIDRCGKHFGTILN 477
+ LN+GG+ + TT TLT+ D ++L SG + T +G + +DR G+ F +LN
Sbjct: 5 ILLNIGGSRYETTADTLTQRDPGSLLAAALSGAAAHGLPTTEDGAVFVDRDGELFRHVLN 64
Query: 478 YLRDGTV-ALPDSYKEIMELLAEAKYFLIEELTESCL 585
+LRDG V AL D+ E +LL EA+Y+ + + E CL
Sbjct: 65 WLRDGAVPALADA--EYRQLLREAEYYRL-PVYEQCL 98
>07_03_0093 + 13330867-13332312
Length = 481
Score = 46.0 bits (104), Expect = 6e-05
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Frame = +1
Query: 301 SQYVKLNVGGTLFYTTIGTLTK--SDNMLRTMFSGRMEVLTDSEGWILIDRCGKHFGTIL 474
S V LNVGG +F TT+ TL++ + + L ++ T + +DR + F T+L
Sbjct: 3 SSVVTLNVGGEVFQTTVATLSRAGASSPLASL------APTPASAPHFLDRDPRLFATLL 56
Query: 475 NYLRDGTVA--LPDSYKEIMELLAEAKYFLIE-ELTESCLQALAKKEREAEPICRVPL 639
++LR G +A PDS LLAEA++F +E L S A A P +PL
Sbjct: 57 SFLRRGRLAPTSPDSDPPSPALLAEARHFGVEGALLASLSPASAFSPLALRPSALLPL 114
>11_03_0014 -
8965966-8965989,8966788-8966920,8967447-8967529,
8967690-8967986,8970067-8970165
Length = 211
Score = 31.5 bits (68), Expect = 1.5
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = -2
Query: 560 IRKYLASANNSMISL*LSGSATVPSRR*FKIVPKCFPQRSIKIHPSESVRTSI 402
+R+ +S N S SL SG A V R VP+ P K HP +T I
Sbjct: 3 VRRMSSSLNMSSSSLRSSGGADVDRRTTTATVPRRIPADQDKQHPKRETKTKI 55
>02_04_0590 - 24154366-24155742
Length = 458
Score = 31.5 bits (68), Expect = 1.5
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Frame = +1
Query: 286 LKGSPSQYVKLNVGGTLFYTTIGTLTKS--DNMLRTMFSGRME----VLTDSEGW---IL 438
+KG + V+LNVGG +F T TL + D ML M D EG
Sbjct: 1 MKGKRGR-VRLNVGGRVFETMASTLASAGRDTMLGAMIDASWNHGGGGDGDGEGGADEYF 59
Query: 439 IDRCGKHFGTILNYLRDGTVALPDSYKEIMELLAEAKYF 555
IDR + F +L+ LR G + +P + + L EA Y+
Sbjct: 60 IDRDPECFAVLLDLLRTGGLHVPPHVADGV-LCREALYY 97
>06_03_0536 + 21906583-21908037
Length = 484
Score = 29.9 bits (64), Expect = 4.5
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Frame = +1
Query: 568 LTESCLQALAKKEREAEPICRVPLITSQKEEQLLIMSTSEPVVKLLINRHNNKYSYTSTS 747
+T C + L+ ERE P+C +P S L+ +E + LL + N TS+S
Sbjct: 363 VTAFCHRLLSGDEREWRPVC-MPEHRSNISSNLV---WTESLFALLYSILNQDICLTSSS 418
Query: 748 DDNLLKNI-ELFDKL--SLRFSGRVL 816
+NL+ I E+ KL SL+F +L
Sbjct: 419 TENLVSVIDEMASKLPRSLKFGNFLL 444
>02_05_0833 + 32080845-32081118,32081483-32081663,32081825-32081999,
32082088-32082220,32082303-32082373,32082738-32082821,
32083106-32083196,32083315-32083835,32083932-32084096,
32084181-32084399,32084859-32084986,32085104-32085293,
32085478-32085561,32085643-32085740,32086127-32086391,
32086511-32086673,32086792-32086972,32087299-32087370,
32087473-32087614
Length = 1078
Score = 29.5 bits (63), Expect = 5.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 715 HNNKYSYTSTSDDNLLKNIELFDK 786
H+ +SY S D NLLK +E++D+
Sbjct: 946 HSGVFSYLSYRDPNLLKTLEVYDE 969
>04_04_1503 +
34031540-34031562,34031682-34032212,34032417-34032571,
34032929-34033020,34033916-34034419
Length = 434
Score = 29.1 bits (62), Expect = 7.8
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +1
Query: 697 KLLINRHNNKYSYTSTSDDNLLKNIELFDKLSLRFSGRVLFIK-DVIGSNEICCWSXFGH 873
K+L ++Y T + ++K LF +L LRF+GR + + ++ + W +
Sbjct: 45 KILTFCRRDEYGITDMTRQVMIKQTYLFRELKLRFAGRRIDNEMKILHEQGMYDWEEYNE 104
Query: 874 GKKCAEVCCTSIVYATDK 927
K EV +I A K
Sbjct: 105 HKTNIEVSIAAIRNALKK 122
>02_03_0065 -
14629676-14629804,14631119-14631247,14631383-14631736,
14631817-14632063,14632155-14632231,14632574-14632648,
14632721-14632822,14632966-14633084,14633538-14633627,
14634866-14635022,14635085-14635098,14635425-14635548,
14635628-14635678,14635793-14635891,14636962-14637072
Length = 625
Score = 29.1 bits (62), Expect = 7.8
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = +1
Query: 472 LNYLRDGTVALPDSYKEIMELLAE--AKYFLIEELTESCLQALAKKEREAEPICRVPLIT 645
L L +A+P Y + E++ A +L ++ E + AK +++ I V ++
Sbjct: 296 LKLLGADLMAIPGLYVFVQEIIKTQVANMYLWPKVLEVPIMDPAKAQKKPVGILHVNIVR 355
Query: 646 SQKEEQLLIMSTSEPVVKLLINRHNNKYSYTSTSDDNL 759
+ K + + S+P VKL + TS NL
Sbjct: 356 AVKLTKKDFLGKSDPYVKLKLTEEKLPSKKTSVKRSNL 393
>02_01_0354 +
2551675-2551874,2552721-2552833,2552982-2553170,
2553667-2553737,2553835-2553909,2553983-2554209,
2554361-2554550,2554627-2554692,2554807-2554895,
2554990-2555104,2555190-2555241,2555317-2555417,
2555516-2555629
Length = 533
Score = 29.1 bits (62), Expect = 7.8
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Frame = +1
Query: 325 GGTLFYTTIGTLTKSDNMLRTMFSGRMEVLTDSEGWILIDRCGKHFGTILNYLRDGTVAL 504
GG + G + +ML S +ME SE +I GT++ + G L
Sbjct: 167 GGEAILVSSGLVLYCGDMLAHTLS-KMEFSVSSEAFIRAPGTRSEIGTVIQGVLLGLFLL 225
Query: 505 PDSYKEIMELLAEAKYFLIE--ELTESCLQ 588
P YK +++LA + + + E C Q
Sbjct: 226 PLLYKSSLQVLAYCRKLESQRTQTVEECTQ 255
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,620,017
Number of Sequences: 37544
Number of extensions: 537286
Number of successful extensions: 1086
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3945842028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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