Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_C08
         (1272 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    30   0.037
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    29   0.065
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   5.7  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   5.7  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 30.3 bits (65), Expect = 0.037
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = +1

Query: 412 LTDSEGWILIDRCGKHFGTILNYLRDGTVALPD---SYKEIMELLAEAKYFLIEELTES 579
           LT + G  L+     +F TIL  +RD T  LP+   +  +I +LL +++Y  I E TES
Sbjct: 639 LTKARGHSLLVADRPNFVTILALVRDATARLPNGEGTRADICQLLKDSQY--IREQTES 695


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 29.5 bits (63), Expect = 0.065
 Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 13/131 (9%)
 Frame = +1

Query: 475 NYLRDGTVALPDSYKEIMELLAEAK-----YFLIEELTESCLQALAKKEREAEPICR--V 633
           N L    + +  SYK  + L  E K     Y L   LT    + + KK      I    V
Sbjct: 432 NLLEKNWLPVHTSYKSGLNLEQEKKDSISHYHLYTNLTALRKRDVLKKGNFTIEILNKTV 491

Query: 634 PLITSQKEEQ----LLIMSTSEPVVKL--LINRHNNKYSYTSTSDDNLLKNIELFDKLSL 795
             +  Q EE+    L+  S +  +V +  L+N+ NN   YTS+ + NL  N +  + +++
Sbjct: 492 LAVVRQSEEEAVSLLINFSKNNTIVDISKLVNKRNNAKIYTSSVNSNLTVN-QTVNPVAI 550

Query: 796 RFSGRVLFIKD 828
              G    I D
Sbjct: 551 NIPGDTSIIVD 561


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -1

Query: 564 FNQEIFSLRQ*LHDLFITVG*RYCAVTKIIQNSTEMLPTTINQNPPFRICE 412
           F+Q+  + R  +H L    G R C   +     T++   TI +N    +CE
Sbjct: 421 FDQDAMASRHPMHYLPFGDGPRNCIGARFAVYQTKVGLITILRNHKVEVCE 471


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 10/26 (38%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -1

Query: 849 NLIRTN-NIFNKQHSPAESQRKFVKE 775
           N +R + +I+++QHS  E QRK +++
Sbjct: 46  NSLRNHKSIYHRQHSKNEQQRKEMEQ 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 291,035
Number of Sequences: 438
Number of extensions: 6144
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43582869
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)