Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_C03
         (1274 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    23   4.9  
EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    23   4.9  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    23   4.9  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    23   4.9  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         22   8.5  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = -1

Query: 341 KLACVEPFGSNEELLPCLELVWIAEVYNSQRCT-STRVMDY 222
           +L+    FG+   L    +L+W  EV N  R      + DY
Sbjct: 173 RLSAANFFGARHGLETLNQLIWFDEVVNELRILHGVEIRDY 213


>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 280 TSSRQGRSSSLLPKGSTQANLFIVERK 360
           TSS  GRS + LP   T+ + F ++ K
Sbjct: 28  TSSPAGRSPAFLPHHFTKRSFFDIQCK 54


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 280 TSSRQGRSSSLLPKGSTQANLFIVERK 360
           TSS  GRS + LP   T+ + F ++ K
Sbjct: 28  TSSPAGRSPAFLPHHFTKRSFFDIQCK 54


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 280 TSSRQGRSSSLLPKGSTQANLFIVERK 360
           TSS  GRS + LP   T+ + F ++ K
Sbjct: 28  TSSPAGRSPAFLPHHFTKRSFFDIQCK 54


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 372 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFA 482
           VG  +      EG     L E +GD G+L  AS +FA
Sbjct: 91  VGTALTFCLQEEGGTTSQLIELLGDAGKLL-ASVHFA 126


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,954
Number of Sequences: 336
Number of extensions: 5004
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 37507765
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)