Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_C03
(1274 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 384 e-107
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 384 e-107
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 384 e-107
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 68 3e-12
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 30 0.59
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 28 2.4
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 9.7
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 384 bits (945), Expect = e-107
Identities = 172/240 (71%), Positives = 207/240 (86%)
Frame = +3
Query: 81 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 260
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 261 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 440
V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 441 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 620
GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+L
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLL 179
Query: 621 KAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 800
KAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G+KVGLIAA
Sbjct: 180 KAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAA 239
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 384 bits (945), Expect = e-107
Identities = 172/240 (71%), Positives = 207/240 (86%)
Frame = +3
Query: 81 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 260
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 261 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 440
V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 441 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 620
GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+L
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLL 179
Query: 621 KAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 800
KAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G+KVGLIAA
Sbjct: 180 KAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAA 239
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 384 bits (945), Expect = e-107
Identities = 172/240 (71%), Positives = 207/240 (86%)
Frame = +3
Query: 81 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 260
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 261 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 440
V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 441 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 620
GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+L
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLL 179
Query: 621 KAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 800
KAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G+KVGLIAA
Sbjct: 180 KAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAA 239
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 67.7 bits (158), Expect = 3e-12
Identities = 41/125 (32%), Positives = 69/125 (55%)
Frame = +3
Query: 366 LEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAK 545
L+ GN P+ +P GT++ + + +L R++G+ A +I D K V+L SG +
Sbjct: 162 LKPGNCFPLRLIPIGTVIHAIGVNPNQKAKLCRSAGSSARIIAF--DGKYAIVRLQSGEE 219
Query: 546 KVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGN 725
+ + ++ +G+V+ + + KAGR+ ++ R P VRG AMNP +HPHGGG
Sbjct: 220 RKILDTSFATIGVVSNIYWQHRQLGKAGRS--RWLGIR---PTVRGTAMNPCDHPHGGGG 274
Query: 726 HQHIG 740
+ IG
Sbjct: 275 GKSIG 279
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 30.3 bits (65), Expect = 0.59
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -2
Query: 592 PATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRL 422
PAT+P F P F +L SGL V+ +P+ + +P SRL
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 603 IDKPILKAGRAYHKYKVKRNCWPYVRGVAMN 695
++KPI K+K K +CW +RG N
Sbjct: 68 VEKPIPVTKEELAKHKTKEDCWIAIRGKVYN 98
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.2 bits (55), Expect = 9.7
Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 9/180 (5%)
Frame = -1
Query: 809 GPASSNKTNFATSRCSSLDSGSLTYMLMVTTTVRMLY-RVHG-NTTYIWPAVTFDLVLVV 636
G ASS+ + A SS +GSL Y T V ++ R G ++T + + F
Sbjct: 439 GSASSSSASLAVPTVSSSTTGSLHYKTTTTVWVTEVFTRYLGDDSTPVTSSSIFSTATEA 498
Query: 635 CPSSFQNRFVNTSTSSNNTDHASVA*WQNLLG--SRR*LYSCTLSI--RIVSNHSGEVSR 468
+S Q +SS + +S + + + G S L S T S+ + N S V
Sbjct: 499 TDTSVQTSSAIYDSSSTSNIQSSSSVYASSTGALSSNSLSSSTSSVSTSYIPNASSSVYA 558
Query: 467 GTCQTTSITHFLFKIAHNGT--LRHSSNRHHI-SNFKSCFLSTINKLACVEPFGSNEELL 297
+ + S + T + +S+ + + SN + T++ + S E++
Sbjct: 559 SSTEALSSNSLSSSTSSASTSYIPSASSSYEVASNSSDYYSQTVSSITASGTTSSTSEIV 618
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,718,849
Number of Sequences: 5004
Number of extensions: 81144
Number of successful extensions: 234
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 693525122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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