Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_C02
         (1224 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    31   0.43 
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    26   9.3  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 30.7 bits (66), Expect = 0.43
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 83  LXGQAXXDAWHXLAXXSXEDAQKAYIEIVEGLIASIGLK 199
           L G+   +AW  L   S EDA   YI  V+ L    G+K
Sbjct: 49  LKGKFKWNAWEELKGKSKEDAASEYISFVDELKTKYGMK 87


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +2

Query: 287 HHRASDFXDAIFILHF--CLKCXXXKKQIHXDXIKLSCSYINERYFQGC*SM 436
           H+ AS F +    +    CL C    KQ+H   +   C   N+R F GC S+
Sbjct: 256 HYPASVFKETTLYVTVEPCLMCAAALKQLHIKAVYFGCG--NDR-FGGCGSV 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,304,843
Number of Sequences: 5004
Number of extensions: 30471
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 663396606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)