Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_C01
         (1217 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0133 + 14053076-14053280,14053524-14053642                       35   0.15 
07_03_0141 + 14249788-14249992,14250240-14250295                       32   0.79 
07_03_0140 + 14238645-14238849,14239081-14239163                       32   0.79 
07_03_0134 + 14064515-14064719,14064962-14065044                       31   1.8  
04_03_0501 + 16593710-16593886,16595255-16595311,16595748-165974...    29   7.4  
06_03_0091 - 16515330-16515548,16515669-16515779,16517483-165175...    29   9.8  

>07_03_0133 + 14053076-14053280,14053524-14053642
          Length = 107

 Score = 34.7 bits (76), Expect = 0.15
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -3

Query: 561 SRTLAGCGYCPSENGKTVCVGCYSGRRTSI*CAS*TSFPLLAA 433
           S T A CG C S   K  CVGC +   ++  C +   FP + A
Sbjct: 24  SATAAQCGCCISSRAKACCVGCIAAGGSNSVCKNTCRFPCILA 66


>07_03_0141 + 14249788-14249992,14250240-14250295
          Length = 86

 Score = 32.3 bits (70), Expect = 0.79
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -3

Query: 561 SRTLAGCGYCPSENGKTVCVGCYSGRRTSI*CAS*TSFPLLAA 433
           S T A CG C S   K  C GC +   +   C +   FP + A
Sbjct: 24  SATAAQCGCCISSRAKACCFGCIAAGGSDSICKNTCCFPCILA 66


>07_03_0140 + 14238645-14238849,14239081-14239163
          Length = 95

 Score = 32.3 bits (70), Expect = 0.79
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -3

Query: 561 SRTLAGCGYCPSENGKTVCVGCYSGRRTSI*CAS*TSFPLLAA 433
           S T A CG C S   K  C GC +   +   C +   FP + A
Sbjct: 24  SATAAQCGCCISSRAKACCFGCIAAGGSDSVCKNTCCFPCILA 66


>07_03_0134 + 14064515-14064719,14064962-14065044
          Length = 95

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -3

Query: 555 TLAGCGYCPSENGKTVCVGCYSGRRTSI*CAS*TSFPLLAA 433
           T A CG C S   K  C GC +   +   C +   FP + A
Sbjct: 26  TAAQCGCCISSRAKACCFGCIAAGGSDSVCKNTCCFPCILA 66


>04_03_0501 +
           16593710-16593886,16595255-16595311,16595748-16597469,
           16599045-16599326,16599521-16599637,16599655-16600365
          Length = 1021

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 393 SVEKPKNELQLTFSPLTKEMK--FKRHIRSMSD 485
           S+ +PKNE Q+   P+T+E K   +  I  MSD
Sbjct: 500 SIPQPKNEYQIVMPPITEEEKEEAEEKIEDMSD 532


>06_03_0091 -
           16515330-16515548,16515669-16515779,16517483-16517524,
           16518067-16518181,16518820-16518914,16519916-16520015,
           16521169-16521264,16522276-16522349,16524581-16524629,
           16525414-16525483,16525553-16525652,16525721-16525779,
           16526633-16526684,16527199-16527405
          Length = 462

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 237 SEFTKSEWKKVSEGGAMETCH 299
           +EF K EW  +++ G++E CH
Sbjct: 300 AEFLKEEWNYLNKTGSLEDCH 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,838,147
Number of Sequences: 37544
Number of extensions: 571940
Number of successful extensions: 1245
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3736328292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)