Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_C01
         (1217 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006662-1|AAM98008.2|  707|Caenorhabditis elegans Hypothetical ...    33   0.54 
Z68752-11|CAM82780.1|  324|Caenorhabditis elegans Hypothetical p...    29   5.0  
Z68752-10|CAA92986.1|  354|Caenorhabditis elegans Hypothetical p...    29   5.0  
AL023840-2|CAM82781.1|  324|Caenorhabditis elegans Hypothetical ...    29   5.0  
AL023840-1|CAA19510.1|  354|Caenorhabditis elegans Hypothetical ...    29   5.0  

>AC006662-1|AAM98008.2|  707|Caenorhabditis elegans Hypothetical
           protein H23L24.3b protein.
          Length = 707

 Score = 32.7 bits (71), Expect = 0.54
 Identities = 11/30 (36%), Positives = 23/30 (76%)
 Frame = -2

Query: 247 VNSLISPDRIPIPVARSTNLNKTVQNRAPA 158
           V+  + P+++PIP+ RS++L+  ++NR P+
Sbjct: 78  VSLQVEPNKLPIPLTRSSSLSSIMENRPPS 107


>Z68752-11|CAM82780.1|  324|Caenorhabditis elegans Hypothetical
           protein T12G3.7b protein.
          Length = 324

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -2

Query: 289 SIAPPSLTFFHSLFVNSLISPDRI-PIPVARSTNLNKTVQNRAPASKRKGSLT 134
           S  PP+LT   S   N  I+PD++ PIPVA +  +   ++++    K++  LT
Sbjct: 54  STTPPTLTLLSST-ANLTIAPDQVAPIPVATNATI---IESKTENEKKEELLT 102


>Z68752-10|CAA92986.1|  354|Caenorhabditis elegans Hypothetical
           protein T12G3.7a protein.
          Length = 354

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -2

Query: 289 SIAPPSLTFFHSLFVNSLISPDRI-PIPVARSTNLNKTVQNRAPASKRKGSLT 134
           S  PP+LT   S   N  I+PD++ PIPVA +  +   ++++    K++  LT
Sbjct: 84  STTPPTLTLLSST-ANLTIAPDQVAPIPVATNATI---IESKTENEKKEELLT 132


>AL023840-2|CAM82781.1|  324|Caenorhabditis elegans Hypothetical
           protein T12G3.7b protein.
          Length = 324

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -2

Query: 289 SIAPPSLTFFHSLFVNSLISPDRI-PIPVARSTNLNKTVQNRAPASKRKGSLT 134
           S  PP+LT   S   N  I+PD++ PIPVA +  +   ++++    K++  LT
Sbjct: 54  STTPPTLTLLSST-ANLTIAPDQVAPIPVATNATI---IESKTENEKKEELLT 102


>AL023840-1|CAA19510.1|  354|Caenorhabditis elegans Hypothetical
           protein T12G3.7a protein.
          Length = 354

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -2

Query: 289 SIAPPSLTFFHSLFVNSLISPDRI-PIPVARSTNLNKTVQNRAPASKRKGSLT 134
           S  PP+LT   S   N  I+PD++ PIPVA +  +   ++++    K++  LT
Sbjct: 84  STTPPTLTLLSST-ANLTIAPDQVAPIPVATNATI---IESKTENEKKEELLT 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,344,950
Number of Sequences: 27780
Number of extensions: 514054
Number of successful extensions: 1222
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3359895476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)