Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_B24
         (1280 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3EDB7 Cluster: Uncharacterized protein At1g15830.1; n=...    36   1.7  
UniRef50_Q4QE97 Cluster: Formin, putative; n=3; Leishmania|Rep: ...    30   3.2  

>UniRef50_Q3EDB7 Cluster: Uncharacterized protein At1g15830.1; n=1;
           Arabidopsis thaliana|Rep: Uncharacterized protein
           At1g15830.1 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 483

 Score = 36.3 bits (80), Expect = 1.7
 Identities = 30/99 (30%), Positives = 34/99 (34%), Gaps = 3/99 (3%)
 Frame = +2

Query: 389 RGXGGRXGGXXXXGXPPXKRGKXGGKXXFTXXPPPKAPXXGDP-XKXXXPPEXXXXLXPX 565
           RG GG        G PP KRG  GG+      PPPK    G+P      PP+      P 
Sbjct: 127 RGGGGEPA---IPGAPPPKRG-GGGEPVIPGAPPPKRGGGGEPVIPGAPPPKRGGGGEPV 182

Query: 566 XRXXXXKXPGXXGE--XXGSXPXTRXGXXXXXXXXXPXP 676
                    G  GE    G+ P  R G         P P
Sbjct: 183 IPGAPPPKRGGGGEPVIPGAPPPKRGGGGEPVIPGAPPP 221


>UniRef50_Q4QE97 Cluster: Formin, putative; n=3; Leishmania|Rep:
           Formin, putative - Leishmania major
          Length = 1300

 Score = 29.9 bits (64), Expect(2) = 3.2
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 460 PXLSPFXGGXXXXXXPPXPPPPAP 389
           P L P  GG      PP PPPP P
Sbjct: 651 PGLPPPTGGPKQPPPPPPPPPPPP 674



 Score = 24.2 bits (50), Expect(2) = 3.2
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 415 PPXPPPPAPXXXN 377
           PP PPPP P   N
Sbjct: 673 PPPPPPPPPRMGN 685


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.308    0.142    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 548,029,500
Number of Sequences: 1657284
Number of extensions: 6117117
Number of successful extensions: 15113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14275
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 130794573157
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)