Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_B24
         (1280 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    25   2.9  
04_04_1475 + 33856351-33856582,33857614-33857781,33858156-338582...    30   3.4  
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542...    24   5.0  
02_04_0382 - 22501041-22501279,22501717-22501810                       29   7.9  

>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 24.6 bits (51), Expect(2) = 2.9
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -2

Query: 460 PXLSPFXGGXXXXXXPPXPPPPAP 389
           P   P   G      PP PPPP P
Sbjct: 548 PPPPPPPSGNKPAFSPPPPPPPPP 571



 Score = 24.2 bits (50), Expect(2) = 2.9
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 415 PPXPPPPAPXXXN 377
           PP PPPP P   N
Sbjct: 602 PPPPPPPPPILPN 614


>04_04_1475 +
           33856351-33856582,33857614-33857781,33858156-33858261,
           33858391-33858442,33858525-33858642,33858736-33858766,
           33858962-33858985,33859075-33859199,33860087-33860168,
           33860319-33860441,33860539-33860592,33860669-33860738,
           33861276-33861309,33861824-33862170
          Length = 521

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 15/44 (34%), Positives = 17/44 (38%)
 Frame = +2

Query: 410 GGXXXXGXPPXKRGKXGGKXXFTXXPPPKAPXXGDPXKXXXPPE 541
           GG    G  P  RG+  G    T  P P A   G P K   P +
Sbjct: 459 GGKGRRGRKPSNRGRGRGAKKATPEPKPSARGRGRPKKTESPAQ 502


>03_02_0071 +
           5425722-5427154,5427259-5427464,5428445-5428686,
           5428788-5429570
          Length = 887

 Score = 24.2 bits (50), Expect(2) = 5.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 415 PPXPPPPAPXXXN 377
           PP PPPP P   N
Sbjct: 356 PPPPPPPPPPKLN 368



 Score = 23.8 bits (49), Expect(2) = 5.0
 Identities = 10/29 (34%), Positives = 11/29 (37%)
 Frame = -2

Query: 475 KRTFXPXLSPFXGGXXXXXXPPXPPPPAP 389
           K+   P   P          PP PPPP P
Sbjct: 333 KQVTSPSPRPVQPSNAPPPPPPPPPPPPP 361


>02_04_0382 - 22501041-22501279,22501717-22501810
          Length = 110

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 466 FXPXLSPFXGGXXXXXXPPXPPPPAP 389
           + P  SP+ GG      PP PPP  P
Sbjct: 81  YDPPPSPYYGGGGGYGKPPPPPPCCP 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.308    0.142    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,187,655
Number of Sequences: 37544
Number of extensions: 266941
Number of successful extensions: 1189
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3980760984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)