Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_B21
         (1273 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    23   4.9  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      22   8.5  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   8.5  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   8.5  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    22   8.5  

>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 190 CRILKWSQGLHPYRSS 237
           C+++K+ Q L PY SS
Sbjct: 113 CKVVKYGQTLGPYLSS 128


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 424 TSSDLQRNLSSCTIG 380
           TS+ L+RNLSS  IG
Sbjct: 119 TSTGLRRNLSSLQIG 133


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 737 LEPGSVLHRLGCSGPARLPFRP 672
           L+  ++ H+L   GP R P +P
Sbjct: 46  LQNAALYHKLQFRGPPRTPLQP 67


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 323 EVPSDRHSASTPGGSTPGNSDRTTGQVP 406
           E P+  +S+S+P GS+P +S  +    P
Sbjct: 30  EAPA-AYSSSSPSGSSPQHSSSSASTSP 56


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 323 EVPSDRHSASTPGGSTPGNSDRTTGQVP 406
           E P+  +S+S+P GS+P +S  +    P
Sbjct: 30  EAPA-AYSSSSPSGSSPQHSSSSASTSP 56


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,149
Number of Sequences: 336
Number of extensions: 5143
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 37405004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)