Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_B21
         (1273 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c...    28   3.2  
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    27   5.5  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    26   9.7  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    26   9.7  

>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 372 LETPIVQLDKFLCKSLDV-VEKSMPSIYMPPEEMYSETRQYVLRRADSV 515
           +E  I  +DK +   ++  + +S+P++  PP + +SET  Y     DS+
Sbjct: 208 IEKKISNVDKPISDLIENDIHESLPALQNPPIQSHSETDLYADEELDSI 256


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -2

Query: 654 WSRQLRLGCLAGGTCR-RICQRL*AHGRERSRWPPSSANPRQLCLVASL 511
           W R   LG L+ G     +C  +     ER   PPS +NP  +  V SL
Sbjct: 73  WQRAEILGALSNGVFLIALCMFIFMEAIERFIEPPSVSNPTLMFFVGSL 121


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 282 ESNPLFRWSMSLGEKSLATGIQLALPAVQLLET--PIV 389
           ES  +F W   +GE+     IQ +L A+QLLE   P+V
Sbjct: 431 ESFMMFVWKKKIGEELKKWIIQDSLKALQLLEAWDPVV 468


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 225 IPIVVSGIGVTEKLYFKIRESNPLF 299
           IP++ SG+    K+   +R+SNP+F
Sbjct: 263 IPLMASGLLEAHKVQSIVRDSNPMF 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,227,842
Number of Sequences: 5004
Number of extensions: 80756
Number of successful extensions: 200
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 691537944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)