Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_B20
(1219 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 281 8e-76
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 273 2e-73
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 171 9e-43
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374... 30 4.2
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 29 5.6
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 281 bits (689), Expect = 8e-76
Identities = 128/221 (57%), Positives = 167/221 (75%)
Frame = +2
Query: 203 VPXSVLKHRKXXEALRTRXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 382
VP SVLK RK E + L + A++ ++ IF RA+QY +EY +E++ ++L R
Sbjct: 11 VPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELVQLKR 70
Query: 383 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 562
+AR +G +YV EAKL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 71 EARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINML 130
Query: 563 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHE 742
R EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+ +N ++E+ L KH+IIC+EDL+HE
Sbjct: 131 RRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIEDLVHE 190
Query: 743 IFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDXG 865
I TVG FK A+NFLWPFKL P GG +KK HYV+GGD G
Sbjct: 191 IMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAG 231
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 273 bits (669), Expect = 2e-73
Identities = 129/235 (54%), Positives = 172/235 (73%), Gaps = 6/235 (2%)
Frame = +2
Query: 179 EASKXLPAVPXSVLKHRKXXEALRTRXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKE 358
EA+K + VP SVL+ RK E + + + +I+ ++ IF RA+QY +EY +E
Sbjct: 4 EAAKVV--VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQE 61
Query: 359 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRL 538
++ ++L R+AR +G +YV E KL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++
Sbjct: 62 KELVQLKREARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKV 121
Query: 539 NKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKR------L 700
NKAT+NMLR EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+T+N ++E+ L
Sbjct: 122 NKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGL 181
Query: 701 HKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDXG 865
KH+IIC+EDL+HEI TVG FK A+NFLWPFKL P GG +KK HYV+GGD G
Sbjct: 182 GKHDIICIEDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAG 236
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 171 bits (416), Expect = 9e-43
Identities = 91/244 (37%), Positives = 140/244 (57%), Gaps = 3/244 (1%)
Frame = +2
Query: 176 KEASKXLPAVPXSVLKHRKXXEALRTRXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 355
+E ++ LP V +VLK RK E + + +R + KR E +V+E+R K
Sbjct: 3 EEGTQQLPYVRETVLKKRKVNEDWAVKNRERKAAKRQRRRDDGKGAIKRPEDFVREFRNK 62
Query: 356 ERDEIRLARQARNRGNYYVPGE---AKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGV 526
E D +R+ + + R P E +KL F IRI G + P +R++L+ RL Q+ GV
Sbjct: 63 ELDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGV 120
Query: 527 FVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHK 706
F++ AT+ L + EP+I +G+PNLK+V++L+YK+G L + P+TSN ++EK L +
Sbjct: 121 FLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGE 180
Query: 707 HNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDXGXXKTRST 886
+ IIC+EDL+HEI +VG F+ ASNFL PFKL P + K + DG + + R
Sbjct: 181 YGIICLEDLVHEIASVGPHFREASNFLMPFKLKCPERRLQMKKKPFKDGAENATWRNRFP 240
Query: 887 IFSG 898
+ G
Sbjct: 241 VVRG 244
>10_06_0101 +
10736987-10737100,10737263-10737301,10737397-10737474,
10737539-10737685,10737781-10737888,10738115-10738449,
10738572-10739544,10739702-10739980
Length = 690
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 269 TLKRRSSAIKKKREIF--KRAEQYVKE-YRIKERDEIRLARQARNRGNYY 409
TL+ R+ IK KRE+F KR E ++E ++ + E+ + A NR +
Sbjct: 149 TLETRTDPIKLKREVFRRKRKEHRIQELLQVDKEAELHMRNVATNRSRNF 198
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 29.5 bits (63), Expect = 5.6
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = -1
Query: 829 LAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVVFME---PLLNNAVGSD 668
L+ + W+ G ++LEL N+E + D+VL + + M LL+N +GSD
Sbjct: 1129 LSYSLGWLSPPSGSVIAAQLLELGKNNEIVTDQVLRQELALVMPKIYSLLSNLIGSD 1185
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,739,694
Number of Sequences: 37544
Number of extensions: 504294
Number of successful extensions: 1131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3736328292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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