Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_B19
         (1302 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    28   2.5  
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    28   2.5  
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...    27   4.3  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   7.5  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   7.5  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    27   7.5  

>SPCC550.03c |||RNA helicase involved in mRNA
            catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +1

Query: 235  LRNQLAEDGCAESQVVLAKQLLEEKCELEADKISNFKQALEWLICATEQAH 387
            L N LA+  C E+  +L+  + +EK E+E     + ++  E ++   E+ +
Sbjct: 1062 LENSLADFSCEETIALLSAFVFDEKTEVEPTISPHLQKGKEMILSVAEKVN 1112


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/60 (21%), Positives = 30/60 (50%)
 Frame = -3

Query: 712 VGQMVLMLVRHRLAHLPPLSYRRLENRCLRPLSSVTSYCKSLLSDVRVEPLLCIVHHSTN 533
           +GQ++ +  +  +  +   +Y  L + C+     +  YC +LL D+  +  L ++H S +
Sbjct: 690 LGQIIGICAKDEVPEVRQSAYALLGDMCMYCFDQIRPYCDALLVDMLPQMQLPLLHVSAS 749


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 478 AASRQETVARKA--ARDLFASLSNGEQYITTVQLERRIRE 591
           AA+ Q+ + + A   +D  A L  GEQY   VQL++ + E
Sbjct: 417 AANLQKELPKDANKLKDFKAKLGEGEQYPELVQLQKEVAE 456


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1334

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = -2

Query: 542  FDKLANRSLAAFLATVSCLLAARQDLARTIAALSSSMTPLRIHLLKSLLASGC 384
            F+ + N S    + ++   L   QD  R +  L        +H LK+ L  GC
Sbjct: 1117 FEPVTNYSKTRNMPSLKKFLTVNQDPLRIVKELYIPTESTSVHFLKNKLCVGC 1169


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 625  RPLSSVTSYCKSLLSDVRVEPLLCIVHHSTNWQ 527
            + L+S+  +   L+SD+ V+P L +   S N Q
Sbjct: 1565 KALNSMQEFTSQLISDINVDPALFVQSTSVNTQ 1597


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +1

Query: 499 VARKAARDLFASLSNGEQY 555
           V RK+ RDL  SLSNG  Y
Sbjct: 708 VERKSIRDLIQSLSNGRLY 726


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,972,353
Number of Sequences: 5004
Number of extensions: 75412
Number of successful extensions: 191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 711409724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)