Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_B19
         (1302 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-3208|AAN13917.2|  853|Drosophila melanogaster CG4917-PA...   107   3e-23
AE014297-3209|AAF56041.3|  872|Drosophila melanogaster CG4917-PB...    96   8e-20

>AE014297-3208|AAN13917.2|  853|Drosophila melanogaster CG4917-PA,
           isoform A protein.
          Length = 853

 Score =  107 bits (257), Expect = 3e-23
 Identities = 60/140 (42%), Positives = 88/140 (62%), Gaps = 3/140 (2%)
 Frame = +1

Query: 190 RKRWNLHGPQGSLRRLRNQLAEDGCAESQVVLAKQLLEEKC-ELEADKISNFKQALEWLI 366
           R+RWNL   + SL +L++ +AE+GC + Q  LAK+LL+    E    K +  ++A+ WL+
Sbjct: 15  RRRWNLED-RASLNKLKHHIAEEGCPQMQYDLAKELLDNSIVEPNLAKGNQSQKAVNWLV 73

Query: 367 CATEQAHPEARRLLRRCIR--SGVIDEDSAAIVRAKSCLAASRQETVARKAARDLFASLS 540
            A    H +A +LLR+C    SG+  E++  + R   CLA +  E  ARKAAR+LFA LS
Sbjct: 74  SAAHNGHEDAVKLLRQCYNDGSGITAENTDEVRR---CLAMTPGERAARKAARELFACLS 130

Query: 541 NGEQYITTVQLERRIREICN 600
           NG ++IT  QLER++R I N
Sbjct: 131 NGNEHITPKQLERKMRRIYN 150



 Score = 47.2 bits (107), Expect = 5e-05
 Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
 Frame = +1

Query: 769  EDLP--DRCPNEEIRNLTVDNLVSAAVDYCQGELPLVSYELTLTDPXVKSLDHIPLLQQA 942
            ED+P  D    E  R +T  +LVSAA +Y  G++P V+  LTL+ P  +SLDH+P   + 
Sbjct: 179  EDVPTIDLANVERRRLITEAHLVSAASNYSAGQMPSVNDALTLSVPDPRSLDHVPCFYRM 238

Query: 943  FXTSNSFLTSFISQTTLLLWS 1005
                  F T F  +   L+ S
Sbjct: 239  IFHPLIFFTLFYHRLLNLIVS 259


>AE014297-3209|AAF56041.3|  872|Drosophila melanogaster CG4917-PB,
           isoform B protein.
          Length = 872

 Score = 96.3 bits (229), Expect = 8e-20
 Identities = 61/159 (38%), Positives = 89/159 (55%), Gaps = 22/159 (13%)
 Frame = +1

Query: 190 RKRWNLHGPQGSLRRLRNQLAEDGCAESQVVLAKQLLEEKCELEADKISNFK-------- 345
           R+RWNL   + SL +L++ +AE+GC + Q  LAK+LL+       D + N+K        
Sbjct: 15  RRRWNLED-RASLNKLKHHIAEEGCPQMQYDLAKELLDNSIGECKDLLENYKIMKIAMSA 73

Query: 346 ------------QALEWLICATEQAHPEARRLLRRCIR--SGVIDEDSAAIVRAKSCLAA 483
                       +A+ WL+ A    H +A +LLR+C    SG+  E++  + R   CLA 
Sbjct: 74  VEPNLAKGNQSQKAVNWLVSAAHNGHEDAVKLLRQCYNDGSGITAENTDEVRR---CLAM 130

Query: 484 SRQETVARKAARDLFASLSNGEQYITTVQLERRIREICN 600
           +  E  ARKAAR+LFA LSNG ++IT  QLER++R I N
Sbjct: 131 TPGERAARKAARELFACLSNGNEHITPKQLERKMRRIYN 169



 Score = 47.2 bits (107), Expect = 5e-05
 Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
 Frame = +1

Query: 769  EDLP--DRCPNEEIRNLTVDNLVSAAVDYCQGELPLVSYELTLTDPXVKSLDHIPLLQQA 942
            ED+P  D    E  R +T  +LVSAA +Y  G++P V+  LTL+ P  +SLDH+P   + 
Sbjct: 198  EDVPTIDLANVERRRLITEAHLVSAASNYSAGQMPSVNDALTLSVPDPRSLDHVPCFYRM 257

Query: 943  FXTSNSFLTSFISQTTLLLWS 1005
                  F T F  +   L+ S
Sbjct: 258  IFHPLIFFTLFYHRLLNLIVS 278


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,437,588
Number of Sequences: 53049
Number of extensions: 826625
Number of successful extensions: 1713
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1708
length of database: 24,988,368
effective HSP length: 87
effective length of database: 20,373,105
effective search space used: 7049094330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)