Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_B19
         (1302 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   4.4  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   4.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   7.7  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 137 FPINFIYPQ*LLYLKIVLFVCFD 69
           FP+ F+    LL+ +++ FVC D
Sbjct: 8   FPVLFVIINVLLHGQVICFVCKD 30


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
 Frame = +2

Query: 281 YWLNSFWKKNVSLR--LTRYQI 340
           ++L   WKKN++LR  +T+Y I
Sbjct: 88  FYLGKEWKKNLNLRDSVTKYLI 109


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
 Frame = +1

Query: 232 RLRNQLAE-DGCAESQVVLA-------KQLLEEKCELEADKISNFKQALEWLICATEQAH 387
           RLRN L E +   +S V L        K+ L++   L  D+I ++K  L+   C+T Q++
Sbjct: 100 RLRNDLFECENKEKSNVCLKFEEQKRRKKSLDDVKILRNDRIDSYKSNLKCDKCSTYQSN 159

Query: 388 PE 393
            E
Sbjct: 160 GE 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 276,326
Number of Sequences: 438
Number of extensions: 5340
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 44783499
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)