Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_B18
(1307 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62263 Cluster: 40S ribosomal protein S14; n=231; cellu... 169 1e-40
UniRef50_Q01E13 Cluster: 40S ribosomal protein S14; n=1; Ostreoc... 126 1e-27
UniRef50_Q4Q6S9 Cluster: 40S ribosomal protein S14; n=1; Leishma... 125 2e-27
UniRef50_P54021 Cluster: 30S ribosomal protein S11P; n=15; Archa... 103 8e-21
UniRef50_A0RWI9 Cluster: 30S ribosomal protein S11P; n=2; Thermo... 99 1e-19
UniRef50_Q3LWB9 Cluster: Ribosomal protein S14; n=1; Bigelowiell... 96 2e-18
UniRef50_A0SNY7 Cluster: 30S ribosomal protein S11; n=1; uncultu... 94 6e-18
UniRef50_Q58NR0 Cluster: Ribosomal protein S14; n=6; Eukaryota|R... 82 4e-14
UniRef50_A7QYG3 Cluster: Chromosome chr17 scaffold_246, whole ge... 66 1e-09
UniRef50_A5BMD1 Cluster: Putative uncharacterized protein; n=1; ... 63 1e-08
UniRef50_A4D1M5 Cluster: Similar to ribosomal protein S14; n=3; ... 60 9e-08
UniRef50_A3A282 Cluster: Putative uncharacterized protein; n=3; ... 50 1e-04
UniRef50_UPI0000DBF82A Cluster: UPI0000DBF82A related cluster; n... 48 4e-04
UniRef50_O59305 Cluster: Putative uncharacterized protein PH1639... 47 0.001
UniRef50_Q5LW33 Cluster: 30S ribosomal protein S11; n=15; Bacter... 47 0.001
UniRef50_A6YE90 Cluster: Ribosomal protein S11; n=5; cellular or... 46 0.002
UniRef50_A6PT07 Cluster: Ribosomal protein S11; n=1; Victivallis... 46 0.003
UniRef50_P59378 Cluster: 30S ribosomal protein S11; n=48; Bacter... 46 0.003
UniRef50_Q12G79 Cluster: 30S ribosomal protein S11; n=186; cellu... 44 0.012
UniRef50_P59375 Cluster: 30S ribosomal protein S11; n=85; cellul... 43 0.015
UniRef50_Q0P3I7 Cluster: Rps11; n=1; Ostreococcus tauri|Rep: Rps... 40 0.14
UniRef50_P04969 Cluster: 30S ribosomal protein S11; n=155; cellu... 40 0.19
UniRef50_Q98Q07 Cluster: 30S ribosomal protein S11; n=33; Bacter... 38 0.43
UniRef50_A0NHE9 Cluster: Ribosomal protein S11; n=1; Oenococcus ... 38 0.57
UniRef50_Q6ASY6 Cluster: Small subunit ribosomal protein, putati... 38 0.76
UniRef50_Q2GEB7 Cluster: 30S ribosomal protein S11; n=1; Neorick... 37 1.3
UniRef50_Q7YDI4 Cluster: Small subunit ribosomal protein; n=29; ... 35 5.4
UniRef50_Q9XTP8 Cluster: 205 kDa Pk1(B+)1+ SICAvar antigen; n=1;... 34 7.1
UniRef50_P56802 Cluster: Chloroplast 30S ribosomal protein S11; ... 34 7.1
>UniRef50_P62263 Cluster: 40S ribosomal protein S14; n=231; cellular
organisms|Rep: 40S ribosomal protein S14 - Homo sapiens
(Human)
Length = 151
Score = 169 bits (412), Expect = 1e-40
Identities = 86/124 (69%), Positives = 91/124 (73%)
Frame = +1
Query: 133 LGPQHXVGATVFGVAXIFASFNXTFVHVTDLSGRETXARVTGGMKVKADRDEASPYAAML 312
LGPQ G VFGV IFASFN TFVHVTDLSG+ET RVTGGMKVKADRDE+SPYAAML
Sbjct: 17 LGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAML 76
Query: 313 AAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 492
AAQDVA++CK LGITALHIKLRA AQ MKIGRIEDVTP+P
Sbjct: 77 AAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIP 136
Query: 493 SDST 504
SDST
Sbjct: 137 SDST 140
>UniRef50_Q01E13 Cluster: 40S ribosomal protein S14; n=1;
Ostreococcus tauri|Rep: 40S ribosomal protein S14 -
Ostreococcus tauri
Length = 243
Score = 126 bits (305), Expect = 1e-27
Identities = 63/98 (64%), Positives = 70/98 (71%)
Frame = +1
Query: 211 HVTDLSGRETXARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXX 390
HVTDLSG+ET +R TGGMKVKADRDE+SPYAAMLAAQDVA +CK LGITALHIK+RA
Sbjct: 90 HVTDLSGKETLSRCTGGMKVKADRDESSPYAAMLAAQDVAARCKELGITALHIKMRAKGG 149
Query: 391 XXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSDST 504
Q +KIGRIEDVTP P+DST
Sbjct: 150 NKTKSPGPGGQSALRALSRSGIKIGRIEDVTPTPTDST 187
Score = 38.3 bits (85), Expect = 0.43
Identities = 18/26 (69%), Positives = 19/26 (73%)
Frame = +1
Query: 133 LGPQHXVGATVFGVAXIFASFNXTFV 210
+GPQ G VFGVA IFASFN TFV
Sbjct: 19 VGPQAREGELVFGVAHIFASFNDTFV 44
>UniRef50_Q4Q6S9 Cluster: 40S ribosomal protein S14; n=1; Leishmania
major|Rep: 40S ribosomal protein S14 - Leishmania major
Length = 203
Score = 125 bits (302), Expect = 2e-27
Identities = 58/82 (70%), Positives = 66/82 (80%)
Frame = +1
Query: 136 GPQHXVGATVFGVAXIFASFNXTFVHVTDLSGRETXARVTGGMKVKADRDEASPYAAMLA 315
GP G V+GV IFASFN TFVHVTD+SGRET +VTGGMKVKADRDE+SPYAAM+A
Sbjct: 20 GPNVKKGDLVYGVVHIFASFNDTFVHVTDMSGRETYVKVTGGMKVKADRDESSPYAAMMA 79
Query: 316 AQDVAEKCKTLGITALHIKLRA 381
AQDV +CK GI ALH+K+RA
Sbjct: 80 AQDVVARCKECGINALHVKMRA 101
Score = 35.9 bits (79), Expect = 2.3
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 456 EDWPH*RCHPRTIRLYP*EGWP 521
EDWPH CHP RL+P +G+P
Sbjct: 127 EDWPHRGCHPDPDRLHPPQGFP 148
>UniRef50_P54021 Cluster: 30S ribosomal protein S11P; n=15;
Archaea|Rep: 30S ribosomal protein S11P - Methanococcus
jannaschii
Length = 129
Score = 103 bits (248), Expect = 8e-21
Identities = 52/113 (46%), Positives = 67/113 (59%)
Frame = +1
Query: 166 FGVAXIFASFNXTFVHVTDLSGRETXARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKT 345
+G+ I++S+N T +H TD++G ET ARV+GG + RDE SPYAAM AA +AE K
Sbjct: 9 WGIVHIYSSYNNTIIHATDITGAETIARVSGGRVTRNQRDEGSPYAAMQAAFKLAEVLKE 68
Query: 346 LGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSDST 504
GI +HIK+RA AQ ++IGRIEDVTPVP D T
Sbjct: 69 RGIENIHIKVRAPGGSGQKNPGPGAQAAIRALARAGLRIGRIEDVTPVPHDGT 121
>UniRef50_A0RWI9 Cluster: 30S ribosomal protein S11P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S11P -
Cenarchaeum symbiosum
Length = 198
Score = 99 bits (238), Expect = 1e-19
Identities = 48/112 (42%), Positives = 67/112 (59%)
Frame = +1
Query: 169 GVAXIFASFNXTFVHVTDLSGRETXARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 348
G+A I++S+N T +H+TDL+G ET + +GG+ V ADR E+SP+AAM AA V E +
Sbjct: 76 GIAHIYSSYNNTIIHMTDLTGAETVSISSGGVHVNADRYESSPFAAMKAANKVIESARAK 135
Query: 349 GITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSDST 504
G T HI++RA AQ +IGRI+DVTP+P D+T
Sbjct: 136 GFTGFHIRVRAVGGVGSRVPGPGAQAAIRALARGGFRIGRIDDVTPIPHDTT 187
>UniRef50_Q3LWB9 Cluster: Ribosomal protein S14; n=1; Bigelowiella
natans|Rep: Ribosomal protein S14 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 145
Score = 96.3 bits (229), Expect = 2e-18
Identities = 47/114 (41%), Positives = 64/114 (56%)
Frame = +1
Query: 163 VFGVAXIFASFNXTFVHVTDLSGRETXARVTGGMKVKADRDEASPYAAMLAAQDVAEKCK 342
+FG+ I ++ N T +HVTD++G ET +R++ G+ +D+ S Y AMLA Q V+ CK
Sbjct: 11 LFGILHILSTKNDTIIHVTDITGSETISRISSGIVATNGKDKKSNYCAMLATQKVSNVCK 70
Query: 343 TLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSDST 504
LGI ALHIK+RA A KIGRIED TP P++ T
Sbjct: 71 VLGINALHIKIRARGGNASHLISTGAHTVVTTLVRLGFKIGRIEDTTPTPTNGT 124
>UniRef50_A0SNY7 Cluster: 30S ribosomal protein S11; n=1; uncultured
euryarchaeote ARMAN-2|Rep: 30S ribosomal protein S11 -
uncultured euryarchaeote ARMAN-2
Length = 169
Score = 94.3 bits (224), Expect = 6e-18
Identities = 49/113 (43%), Positives = 67/113 (59%)
Frame = +1
Query: 166 FGVAXIFASFNXTFVHVTDLSGRETXARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKT 345
+ VA +++S N T + +TDLSG ET A +GGM V AD E SPYAAM AA VA + K
Sbjct: 46 WAVAHVYSSKNDTIITLTDLSGSETIAVGSGGMMVNADSQEGSPYAAMQAAYKVAAEAKE 105
Query: 346 LGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSDST 504
GIT ++I++RA AQ +++ RIEDVTP+P+D+T
Sbjct: 106 KGITNINIEIRAPGGHGSKTPGHGAQAVVRVLARSGLRVNRIEDVTPIPTDTT 158
>UniRef50_Q58NR0 Cluster: Ribosomal protein S14; n=6; Eukaryota|Rep:
Ribosomal protein S14 - Palaemonetes pugio
Length = 77
Score = 81.8 bits (193), Expect = 4e-14
Identities = 39/54 (72%), Positives = 42/54 (77%)
Frame = +1
Query: 133 LGPQHXVGATVFGVAXIFASFNXTFVHVTDLSGRETXARVTGGMKVKADRDEAS 294
LGPQ G VF V I+AS+N TFVHVTDLSGRET RVTGG KVKADRDE+S
Sbjct: 17 LGPQVREGENVFAVCHIYASYNDTFVHVTDLSGRETIIRVTGGQKVKADRDESS 70
>UniRef50_A7QYG3 Cluster: Chromosome chr17 scaffold_246, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_246, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 182
Score = 66.5 bits (155), Expect = 1e-09
Identities = 31/49 (63%), Positives = 37/49 (75%)
Frame = +1
Query: 235 ETXARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRA 381
ET R TGGMK K D +E+SP AAM AAQDV+++CK L IT LH+KL A
Sbjct: 50 ETLVRTTGGMKEKTDGEESSPCAAMPAAQDVSQECKELDITVLHVKLHA 98
>UniRef50_A5BMD1 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 104
Score = 63.3 bits (147), Expect = 1e-08
Identities = 31/49 (63%), Positives = 37/49 (75%)
Frame = +1
Query: 235 ETXARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRA 381
ET R TGGMK KAD +E+SP AAM AAQDV+++ K L IT LH+KL A
Sbjct: 29 ETLVRSTGGMKEKADGEESSPCAAMPAAQDVSQRFKELDITVLHVKLHA 77
>UniRef50_A4D1M5 Cluster: Similar to ribosomal protein S14; n=3;
Homo/Pan/Gorilla group|Rep: Similar to ribosomal protein
S14 - Homo sapiens (Human)
Length = 350
Score = 60.5 bits (140), Expect = 9e-08
Identities = 28/40 (70%), Positives = 33/40 (82%)
Frame = +1
Query: 262 MKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRA 381
MK +AD+DE+SP AML AQDV ++CK LGITALHIKL A
Sbjct: 1 MKEQADQDESSPCTAMLTAQDVVQRCKELGITALHIKLLA 40
>UniRef50_A3A282 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 332
Score = 50.0 bits (114), Expect = 1e-04
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +1
Query: 250 VTGGMKVKADRDEASPYAAMLAAQDVAEKCK 342
V GGMK+KAD DE+SPYAAML +QDVA CK
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCK 241
>UniRef50_UPI0000DBF82A Cluster: UPI0000DBF82A related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DBF82A UniRef100 entry -
Rattus norvegicus
Length = 119
Score = 48.4 bits (110), Expect = 4e-04
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = +1
Query: 133 LGPQHXVGATVFGVAXIFASFNXTFVHVTDLSGR-ETXARVTGGMKVKADRDEASPYAAM 309
L PQ G V GV IFASF +F++ TD+ G+ T VT MK + E +P +
Sbjct: 7 LRPQVVEGQNVLGVCYIFASFGDSFIYGTDVYGKVNTCQYVTSRMKTQ--YAETNPCHRL 64
Query: 310 LA-AQDVAEKCKTLGITALHIKLR 378
A DV + K + + ALHI+L+
Sbjct: 65 HAGCLDVTHRFKEMSVPALHIRLQ 88
>UniRef50_O59305 Cluster: Putative uncharacterized protein PH1639;
n=1; Pyrococcus horikoshii|Rep: Putative uncharacterized
protein PH1639 - Pyrococcus horikoshii
Length = 102
Score = 46.8 bits (106), Expect = 0.001
Identities = 27/95 (28%), Positives = 40/95 (42%)
Frame = -3
Query: 492 WYGGDIFNAANLHT*TSKSPKCRLSTRTRGLCFVSTSSTELYVQGRYAKSFAFLCYILCR 313
W ++ N + + S+ P C L T R F S+ V + F C
Sbjct: 2 WNWSNVLNPSYFKSCPSQGPNCSLCTWPRSFAFASSWGPHPNVNTDNSLFQCFFCCSPSS 61
Query: 312 QHSSVG*RFITVSLHLHATSDTGXSFPAG*ISNMN 208
+H +G R I VS + H T+ + F G ISN+N
Sbjct: 62 KHCCIGGRLIPVSFNYHTTAPSAYRFRTGDISNVN 96
>UniRef50_Q5LW33 Cluster: 30S ribosomal protein S11; n=15;
Bacteria|Rep: 30S ribosomal protein S11 - Silicibacter
pomeroyi
Length = 130
Score = 46.8 bits (106), Expect = 0.001
Identities = 23/70 (32%), Positives = 40/70 (57%)
Frame = +1
Query: 169 GVAXIFASFNXTFVHVTDLSGRETXARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 348
GVA + ++FN T + ++D+ G G M K R +++PYAA LAA+D K +
Sbjct: 20 GVAHVNSTFNNTKILISDVQGNAISWSSAGTMGFKGSR-KSTPYAAQLAAEDAGRKAQDH 78
Query: 349 GITALHIKLR 378
G+ L ++++
Sbjct: 79 GVKTLEVEVQ 88
>UniRef50_A6YE90 Cluster: Ribosomal protein S11; n=5; cellular
organisms|Rep: Ribosomal protein S11 - Chlorokybus
atmophyticus (Soil alga)
Length = 262
Score = 46.4 bits (105), Expect = 0.002
Identities = 34/113 (30%), Positives = 49/113 (43%)
Frame = +1
Query: 154 GATVFGVAXIFASFNXTFVHVTDLSGRETXARVTGGMKVKADRDEASPYAAMLAAQDVAE 333
G GVA I + N T + +TDL G +G + K R + S YAA AA+ A+
Sbjct: 147 GVQRLGVAHIQTTLNNTIITITDLDGNTKSWSSSGSIGFKGSRRKTS-YAAQAAAETAAK 205
Query: 334 KCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 492
K LGI + +K+R +KI +I+D TP+P
Sbjct: 206 KSIQLGIKDVTVKIRG--------FGPGRDSSLRGLQIGGLKIYKIQDTTPLP 250
>UniRef50_A6PT07 Cluster: Ribosomal protein S11; n=1; Victivallis
vadensis ATCC BAA-548|Rep: Ribosomal protein S11 -
Victivallis vadensis ATCC BAA-548
Length = 148
Score = 45.6 bits (103), Expect = 0.003
Identities = 31/108 (28%), Positives = 50/108 (46%)
Frame = +1
Query: 169 GVAXIFASFNXTFVHVTDLSGRETXARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 348
G+A + A+FN T V TDL G TGG +++ YAA + A D A+K + +
Sbjct: 38 GIAYVLATFNNTKVTFTDLHG-NVICWSTGGKNGFKGSRKSTAYAAQVIAGDAAKKAQLV 96
Query: 349 GITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 492
G+ + ++++ A M+I I+D+TPVP
Sbjct: 97 GMKEVEVRIKGPGAGRESAVRGIA--------AAGMEISTIKDITPVP 136
>UniRef50_P59378 Cluster: 30S ribosomal protein S11; n=48;
Bacteria|Rep: 30S ribosomal protein S11 - Streptococcus
mutans
Length = 127
Score = 45.6 bits (103), Expect = 0.003
Identities = 29/108 (26%), Positives = 50/108 (46%)
Frame = +1
Query: 169 GVAXIFASFNXTFVHVTDLSGRETXARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 348
G+A I A+FN T V +TD+ G G + K R +++P+AA +AA+ A+ +
Sbjct: 17 GIAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEH 75
Query: 349 GITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 492
G+ + + ++ A +++ I DVTPVP
Sbjct: 76 GLKTVEVTVKGPGSGRESAIRALA--------AAGLEVTSIRDVTPVP 115
>UniRef50_Q12G79 Cluster: 30S ribosomal protein S11; n=186; cellular
organisms|Rep: 30S ribosomal protein S11 - Polaromonas
sp. (strain JS666 / ATCC BAA-500)
Length = 134
Score = 43.6 bits (98), Expect = 0.012
Identities = 29/108 (26%), Positives = 48/108 (44%)
Frame = +1
Query: 169 GVAXIFASFNXTFVHVTDLSGRETXARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 348
G+A + ASFN T + +TD G +GG K R +++P+AA +A++
Sbjct: 24 GIAHVHASFNNTIITITDRQGNALSWASSGGQGFKGSR-KSTPFAAQVASEVAGRAAIEQ 82
Query: 349 GITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 492
GI L ++++ + ++I I DVTPVP
Sbjct: 83 GIKNLDVEIKG--------PGPGRESSVRALGALGIRINSIADVTPVP 122
>UniRef50_P59375 Cluster: 30S ribosomal protein S11; n=85; cellular
organisms|Rep: 30S ribosomal protein S11 - Shewanella
oneidensis
Length = 130
Score = 43.2 bits (97), Expect = 0.015
Identities = 30/108 (27%), Positives = 47/108 (43%)
Frame = +1
Query: 169 GVAXIFASFNXTFVHVTDLSGRETXARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 348
G+A I ASFN T V +TD G +GG + R +++P+AA +AA+ +
Sbjct: 20 GMAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSR-KSTPFAAQVAAERAGAAAQDY 78
Query: 349 GITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 492
G+ L + ++ + KI I DVTP+P
Sbjct: 79 GLKNLEVFVKG--------PGPGRESAIRALNAVGYKITNITDVTPIP 118
>UniRef50_Q0P3I7 Cluster: Rps11; n=1; Ostreococcus tauri|Rep: Rps11
- Ostreococcus tauri
Length = 121
Score = 39.9 bits (89), Expect = 0.14
Identities = 23/69 (33%), Positives = 34/69 (49%)
Frame = +1
Query: 172 VAXIFASFNXTFVHVTDLSGRETXARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 351
+ I + N TFV++TDL G +G + K + ++S YAA + V + C
Sbjct: 12 ILCISTTLNNTFVNLTDLEGNTLCCVSSGSLGFKGSK-KSSSYAAQSTTEKVLQFCAQQS 70
Query: 352 ITALHIKLR 378
I L IKLR
Sbjct: 71 IEKLMIKLR 79
>UniRef50_P04969 Cluster: 30S ribosomal protein S11; n=155; cellular
organisms|Rep: 30S ribosomal protein S11 - Bacillus
subtilis
Length = 131
Score = 39.5 bits (88), Expect = 0.19
Identities = 27/108 (25%), Positives = 48/108 (44%)
Frame = +1
Query: 169 GVAXIFASFNXTFVHVTDLSGRETXARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 348
G+A I ++FN T V +TD G G + + R +++P+AA +AA+ A+
Sbjct: 21 GIAHIRSTFNNTIVTITDTHGNAISWSSAGALGFRGSR-KSTPFAAQMAAETAAKGSIEH 79
Query: 349 GITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 492
G+ L + ++ + +++ I DVTPVP
Sbjct: 80 GLKTLEVTVKG--------PGSGREAAIRALQAAGLEVTAIRDVTPVP 119
>UniRef50_Q98Q07 Cluster: 30S ribosomal protein S11; n=33;
Bacteria|Rep: 30S ribosomal protein S11 - Mycoplasma
pulmonis
Length = 136
Score = 38.3 bits (85), Expect = 0.43
Identities = 23/70 (32%), Positives = 38/70 (54%)
Frame = +1
Query: 169 GVAXIFASFNXTFVHVTDLSGRETXARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 348
GVA I ++ N T V +D G +G + K + + + YAA LAAQ+ +EK K
Sbjct: 21 GVAHIHSTHNNTIVTFSDEKGNVISWASSGTIGYKGTKKKTA-YAAGLAAQNASEKAKEH 79
Query: 349 GITALHIKLR 378
GI + ++++
Sbjct: 80 GIREVSVRVK 89
>UniRef50_A0NHE9 Cluster: Ribosomal protein S11; n=1; Oenococcus
oeni ATCC BAA-1163|Rep: Ribosomal protein S11 -
Oenococcus oeni ATCC BAA-1163
Length = 113
Score = 37.9 bits (84), Expect = 0.57
Identities = 21/70 (30%), Positives = 37/70 (52%)
Frame = +1
Query: 169 GVAXIFASFNXTFVHVTDLSGRETXARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 348
GVA I ++FN T V +TD +G G + K R +++P+AA LA + A+
Sbjct: 22 GVAHIHSTFNNTIVLITDEAGNAVSWSSAGSLGFKGSR-KSTPFAAQLAGEAAAKAAMEQ 80
Query: 349 GITALHIKLR 378
+ ++ I ++
Sbjct: 81 NMHSVAISVK 90
>UniRef50_Q6ASY6 Cluster: Small subunit ribosomal protein, putative;
n=19; Spermatophyta|Rep: Small subunit ribosomal
protein, putative - Oryza sativa subsp. japonica (Rice)
Length = 366
Score = 37.5 bits (83), Expect = 0.76
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +1
Query: 196 NXTFVHVTDLSGRETXARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKL 375
N TFV VTD+ G + G ++ + R S YAA A+ V + +G+ ++ +K+
Sbjct: 254 NKTFVTVTDVRGNKKTGASAGCLEDRKGRSRLSKYAAEATAEHVGRAARKMGLKSVVMKV 313
Query: 376 R 378
+
Sbjct: 314 K 314
>UniRef50_Q2GEB7 Cluster: 30S ribosomal protein S11; n=1;
Neorickettsia sennetsu str. Miyayama|Rep: 30S ribosomal
protein S11 - Neorickettsia sennetsu (strain Miyayama)
Length = 120
Score = 36.7 bits (81), Expect = 1.3
Identities = 20/71 (28%), Positives = 36/71 (50%)
Frame = +1
Query: 163 VFGVAXIFASFNXTFVHVTDLSGRETXARVTGGMKVKADRDEASPYAAMLAAQDVAEKCK 342
V G A + +FN ++ VTD G +G + K ++ +++ YAA A + K K
Sbjct: 8 VSGNAHVIVTFNNVYISVTDHQGNVQGWASSGSVGFKGNK-KSTAYAAQSVATTLMTKLK 66
Query: 343 TLGITALHIKL 375
+G+ L++ L
Sbjct: 67 RIGLKILNVHL 77
>UniRef50_Q7YDI4 Cluster: Small subunit ribosomal protein; n=29;
Magnoliophyta|Rep: Small subunit ribosomal protein -
Berberis thunbergii (Japanese barberry)
Length = 150
Score = 34.7 bits (76), Expect = 5.4
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +1
Query: 196 NXTFVHVTDLSGRETXARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKL 375
N TFV VTD G + G ++ S YAA A+ V + LG+ ++ +K+
Sbjct: 54 NNTFVTVTDARGNKKTGASAGSLEEFKGGSRLSRYAAKATAEHVGRSARNLGMKSVVMKV 113
Query: 376 R 378
+
Sbjct: 114 K 114
>UniRef50_Q9XTP8 Cluster: 205 kDa Pk1(B+)1+ SICAvar antigen; n=1;
Plasmodium knowlesi|Rep: 205 kDa Pk1(B+)1+ SICAvar
antigen - Plasmodium knowlesi
Length = 1759
Score = 34.3 bits (75), Expect = 7.1
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = +3
Query: 315 GTGCSREMQNSWHNGLAHKAPCYWWKQNKDPWSWCSVCTSGS 440
GT NS NG H PC+W K +K W C + TSGS
Sbjct: 212 GTKPGTSCHNS--NGKEHCVPCHWDKDDK--WKDCKITTSGS 249
>UniRef50_P56802 Cluster: Chloroplast 30S ribosomal protein S11;
n=85; Tracheophyta|Rep: Chloroplast 30S ribosomal
protein S11 - Arabidopsis thaliana (Mouse-ear cress)
Length = 138
Score = 34.3 bits (75), Expect = 7.1
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +1
Query: 169 GVAXIFASFNXTFVHVTDLSGRETXARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 348
GV + ASFN T V VTD+ GR G + R +P+AA AA +
Sbjct: 28 GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTR-RGTPFAAQTAAGNAIRAVVDQ 86
Query: 349 GITALHIKLR 378
G+ ++++
Sbjct: 87 GMQRAEVRIK 96
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 575,832,004
Number of Sequences: 1657284
Number of extensions: 9200539
Number of successful extensions: 17858
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 17397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17845
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 134439003988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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