Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_B17
(1264 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 286 4e-78
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 89 1e-18
SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces... 77 5e-15
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 1.0
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 29 1.4
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 28 2.4
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 4.1
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 27 5.5
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch... 27 5.5
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 27 5.5
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 27 7.2
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 26 9.6
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 286 bits (702), Expect = 4e-78
Identities = 133/245 (54%), Positives = 185/245 (75%), Gaps = 2/245 (0%)
Frame = +2
Query: 239 KPICLIILGMAGAGKTSFTRRLSSKVINGSRP-YLVNLDPACREVPYPANIDIRDTVDYK 415
KP +I++GMAG+GKT+F ++L++ + + ++P Y++NLDPA R +PY ANIDIRDT++YK
Sbjct: 7 KPCAIIVVGMAGSGKTTFMQQLNAHLHSKNKPPYILNLDPAVRNLPYEANIDIRDTINYK 66
Query: 416 EVMKQYGLGPNGGIVTALNLFSTKFGQVVDLIEKAGKKHKYCVIDTPGQIEVFTWSASGT 595
EVMKQY LGPNGGI+T+LNLF TKF QV+ ++EK + +IDTPGQIE+F WSASG+
Sbjct: 67 EVMKQYNLGPNGGIMTSLNLFVTKFDQVLKILEKRAPTVDHILIDTPGQIEIFQWSASGS 126
Query: 596 IVTETLASSCPTVVVYVMDTVRSVSPVTFMSNMLYACSILYKTRLPFIVVMNKIDVVNNS 775
I+ +TLASS PT + YV+DT R+ S T+MS+MLYACS+LYK +LP I+V NK DV ++
Sbjct: 127 IICDTLASSWPTCIAYVVDTPRATSTSTWMSSMLYACSMLYKAKLPLIIVYNKCDVQDSE 186
Query: 776 YAVEWMRDFEAFQEALNADGGGETEGGNT-YIGNLTQSMALALDSFYSDLKCCGVSAHTG 952
+A +WM DFE FQ+A+ D G +EG + Y+G+L SM+L L+ FY L S+ TG
Sbjct: 187 FAKKWMTDFEEFQQAVTKDEGMSSEGATSGYMGSLVNSMSLMLEEFYRHLDFVSCSSVTG 246
Query: 953 EGIXE 967
EG+ +
Sbjct: 247 EGMDD 251
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 89.0 bits (211), Expect = 1e-18
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 5/180 (2%)
Frame = +2
Query: 242 PICLIILGMAGAGKTSFTRRLSSKVIN-GSRPYLVNLDPACREVPYPANIDIRDTVDYKE 418
P C +++G G+GK+++ + + G +VNLDPA + YP IDIR +D +
Sbjct: 2 PFCQVVVGPPGSGKSTYCFGMYQLLSAIGRSSIIVNLDPANDFIKYPCAIDIRKVLDVEM 61
Query: 419 VMKQYGLGPNGGIVTALNLFSTKFGQVVDLIEKAGKKHK--YCVIDTPGQIEVFTWSASG 592
+ K Y LGPNG ++ A+ V+ + K KKH+ Y + D PGQ+E+FT S
Sbjct: 62 IQKDYDLGPNGALIYAMEAIEYH----VEWLLKELKKHRDSYVIFDCPGQVELFTNHNSL 117
Query: 593 TIVTETLASSCP--TVVVYVMDTVRSVSPVTFMSNMLYACSILYKTRLPFIVVMNKIDVV 766
+ +TL V V ++D +P ++S +L + + +P + +++K D++
Sbjct: 118 QKIIKTLEKELDYRPVSVQLVDAYCCTNPSAYVSALLVCLKGMLQLDMPHVNILSKADLL 177
>SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 276
Score = 77.0 bits (181), Expect = 5e-15
Identities = 47/180 (26%), Positives = 87/180 (48%), Gaps = 3/180 (1%)
Frame = +2
Query: 245 ICLIILGMAGAGKTSFTRRLSSKVINGSRP-YLVNLDPACREVPYPANIDIRDTVDYKEV 421
+ + G+A +GK++F L S + + R +LVNLDPA + +DIRD + +V
Sbjct: 4 VAAFVCGVASSGKSTFCGALMSYMKSVGRSCHLVNLDPAAENFEWEPTVDIRDLISIDDV 63
Query: 422 MKQYGLGPNGGIVTALNLFSTKFGQVVDLIEKAGKKHKYCVIDTPGQIEVFTW--SASGT 595
M++ GPNGG++ + + E Y + D PGQIE++T
Sbjct: 64 MEELDYGPNGGLIYCFEFLMENLDWLNE--EIGDYDEDYLIFDMPGQIELYTHVPILPAL 121
Query: 596 IVTETLASSCPTVVVYVMDTVRSVSPVTFMSNMLYACSILYKTRLPFIVVMNKIDVVNNS 775
I + + VY++++ V F + +L A S + +P I +++K+D++ ++
Sbjct: 122 IRHLQVTLNFRPCAVYLLESQFLVDRTKFFAGVLSAMSAMVMMEVPHINLLSKMDLLKDN 181
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 1.0
Identities = 22/73 (30%), Positives = 33/73 (45%)
Frame = +2
Query: 542 VIDTPGQIEVFTWSASGTIVTETLASSCPTVVVYVMDTVRSVSPVTFMSNMLYACSILYK 721
+IDTPG + GT S C + + V+D + + P T S L L
Sbjct: 553 IIDTPGHESFTNLRSRGT-------SLC-NIAILVIDIMHGLEPQTIESIRL-----LRD 599
Query: 722 TRLPFIVVMNKID 760
+ PF+V +NK+D
Sbjct: 600 QKTPFVVALNKVD 612
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +2
Query: 251 LIILGMAGAGKTSFTRRLSSKVINGSRPY-LVNLDPACREVPYPANIDI 394
L++ G G+GK+SF+R ++++++ R ++LDP EV +I +
Sbjct: 334 LMVCGPKGSGKSSFSRYITNRLLQQYRHIAYLDLDPGQPEVVPSGHISL 382
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 776 YAVEWMRDFEAFQEALNADGGGETEG 853
+A WM+D +A +EA+N+ G E +G
Sbjct: 150 FAFVWMKDRKAAEEAMNSLNGTEIDG 175
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 248 CLIILGMAGAGKTSFTRRLSSKVINGSR 331
C+II G +GAGKT +R+ + + S+
Sbjct: 128 CIIISGESGAGKTEAAKRIMQYITHVSK 155
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 236 NKPICLIILGMAGAGKTSFTRRLSSKVINGSRPYLVNLDPACREV 370
N P+ + +L A G T+F + +S ++ + +LVN P EV
Sbjct: 49 NWPVSIKLLNTALYGLTTFAAQFNSTTMSPTTSHLVNAYPIGHEV 93
>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 311
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/43 (23%), Positives = 20/43 (46%)
Frame = +2
Query: 737 IVVMNKIDVVNNSYAVEWMRDFEAFQEALNADGGGETEGGNTY 865
+ ++ K+D +N + AV+W+ F G E+ G +
Sbjct: 139 LAILGKLDYLNKNTAVDWLMKCYNFDGGFGLCPGAESHGAMVF 181
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -2
Query: 684 INVTGDTLRTVSITYTTTVGQDDASVS--VTIVPDADHVNTS 565
+N T T S+ TTT V+ T+VP HVNT+
Sbjct: 90 MNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNTT 131
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.6 bits (56), Expect = 7.2
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = -3
Query: 287 KSFQHRPYLKLSNKWVCWAPRLNLLVYLYRKTFFPQCIS--FSR 162
K F+ +LK+S+ +VC LN+L Y+ R FP IS FSR
Sbjct: 104 KEFKKDVFLKISDVFVCVYSNLNIL-YISRS--FPDQISLLFSR 144
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 26.2 bits (55), Expect = 9.6
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 257 ILGMAGAGKTSFTRRLSSKVINGSRPY-LVNLDPACREVPYP 379
I+GM GK++F R ++ V+ Y +DP +V P
Sbjct: 25 IVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVP 66
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,224,389
Number of Sequences: 5004
Number of extensions: 88871
Number of successful extensions: 307
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 685576410
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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