Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_B17
(1264 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-10|AAA19064.1| 355|Caenorhabditis elegans Gro-1 operon g... 290 2e-78
AY052770-1|AAL14109.1| 355|Caenorhabditis elegans GOP-2 protein. 290 2e-78
AL033514-15|CAA22102.1| 272|Caenorhabditis elegans Hypothetical... 82 9e-16
U97196-2|AAB52461.2| 268|Caenorhabditis elegans Hypothetical pr... 78 1e-14
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 32 0.99
U80445-11|AAB37801.2| 479|Caenorhabditis elegans Hypothetical p... 31 1.3
U61944-5|AAB03121.2| 482|Caenorhabditis elegans Hypothetical pr... 30 4.0
AF039041-7|ABM01867.1| 335|Caenorhabditis elegans G protein, al... 29 5.3
L26987-1|AAA62312.1| 627|Caenorhabditis elegans par-2 protein. 29 7.0
AF106580-1|AAK73890.3| 582|Caenorhabditis elegans Abnormal embr... 29 7.0
Z81508-1|CAB04142.1| 331|Caenorhabditis elegans Hypothetical pr... 29 9.2
Z48621-11|CAE17932.2| 212|Caenorhabditis elegans Hypothetical p... 29 9.2
U80025-2|AAD32270.3| 806|Caenorhabditis elegans Hypothetical pr... 29 9.2
DQ016970-1|AAY42967.1| 212|Caenorhabditis elegans Rab GTPase GL... 29 9.2
AL117207-13|CAB60393.2| 327|Caenorhabditis elegans Hypothetical... 29 9.2
AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transport... 29 9.2
>U10402-10|AAA19064.1| 355|Caenorhabditis elegans Gro-1 operon gene
protein 2 protein.
Length = 355
Score = 290 bits (711), Expect = 2e-78
Identities = 136/259 (52%), Positives = 191/259 (73%), Gaps = 1/259 (0%)
Frame = +2
Query: 194 SSDTNKPEGSNAEPNKPICLIILGMAGAGKTSFTRRLSSKV-INGSRPYLVNLDPACREV 370
S + + G N KP +++LGMAG+GKT+F +RL++ + + PY++NLDPA +V
Sbjct: 16 SEEPSPQTGPNVN-QKP-SILVLGMAGSGKTTFVQRLTAFLHARKTPPYVINLDPAVSKV 73
Query: 371 PYPANIDIRDTVDYKEVMKQYGLGPNGGIVTALNLFSTKFGQVVDLIEKAGKKHKYCVID 550
PYP N+DIRDTV YKEVMK++G+GPNG I+T LNL T+F +V++LI K C++D
Sbjct: 74 PYPVNVDIRDTVKYKEVMKEFGMGPNGAIMTCLNLMCTRFDKVIELINKRSSDFSVCLLD 133
Query: 551 TPGQIEVFTWSASGTIVTETLASSCPTVVVYVMDTVRSVSPVTFMSNMLYACSILYKTRL 730
TPGQIE FTWSASG+I+T++LASS PTVV+Y++D+ R+ +P TFMSNMLYACSILY+T+L
Sbjct: 134 TPGQIEAFTWSASGSIITDSLASSHPTVVMYIVDSARATNPTTFMSNMLYACSILYRTKL 193
Query: 731 PFIVVMNKIDVVNNSYAVEWMRDFEAFQEALNADGGGETEGGNTYIGNLTQSMALALDSF 910
PFIVV NK D+V ++A++WM+DFE F EAL + ++Y+ +L++S++L LD F
Sbjct: 194 PFIVVFNKADIVKPTFALKWMQDFERFDEALE-------DARSSYMNDLSRSLSLVLDEF 246
Query: 911 YSDLKCCGVSAHTGEGIXE 967
Y LK VS+ TGEG +
Sbjct: 247 YCGLKTVCVSSATGEGFED 265
>AY052770-1|AAL14109.1| 355|Caenorhabditis elegans GOP-2 protein.
Length = 355
Score = 290 bits (711), Expect = 2e-78
Identities = 136/259 (52%), Positives = 191/259 (73%), Gaps = 1/259 (0%)
Frame = +2
Query: 194 SSDTNKPEGSNAEPNKPICLIILGMAGAGKTSFTRRLSSKV-INGSRPYLVNLDPACREV 370
S + + G N KP +++LGMAG+GKT+F +RL++ + + PY++NLDPA +V
Sbjct: 16 SEEPSPQTGPNVN-QKP-SILVLGMAGSGKTTFVQRLTAFLHARKTPPYVINLDPAVSKV 73
Query: 371 PYPANIDIRDTVDYKEVMKQYGLGPNGGIVTALNLFSTKFGQVVDLIEKAGKKHKYCVID 550
PYP N+DIRDTV YKEVMK++G+GPNG I+T LNL T+F +V++LI K C++D
Sbjct: 74 PYPVNVDIRDTVKYKEVMKEFGMGPNGAIMTCLNLMCTRFDKVIELINKRSSDFSVCLLD 133
Query: 551 TPGQIEVFTWSASGTIVTETLASSCPTVVVYVMDTVRSVSPVTFMSNMLYACSILYKTRL 730
TPGQIE FTWSASG+I+T++LASS PTVV+Y++D+ R+ +P TFMSNMLYACSILY+T+L
Sbjct: 134 TPGQIEAFTWSASGSIITDSLASSHPTVVMYIVDSARATNPTTFMSNMLYACSILYRTKL 193
Query: 731 PFIVVMNKIDVVNNSYAVEWMRDFEAFQEALNADGGGETEGGNTYIGNLTQSMALALDSF 910
PFIVV NK D+V ++A++WM+DFE F EAL + ++Y+ +L++S++L LD F
Sbjct: 194 PFIVVFNKADIVKPTFALKWMQDFERFDEALE-------DARSSYMNDLSRSLSLVLDEF 246
Query: 911 YSDLKCCGVSAHTGEGIXE 967
Y LK VS+ TGEG +
Sbjct: 247 YCGLKTVCVSSATGEGFED 265
>AL033514-15|CAA22102.1| 272|Caenorhabditis elegans Hypothetical
protein Y75B8A.14 protein.
Length = 272
Score = 81.8 bits (193), Expect = 9e-16
Identities = 51/176 (28%), Positives = 92/176 (52%), Gaps = 4/176 (2%)
Frame = +2
Query: 254 IILGMAGAGKTSFTRRLSSKVINGSRPY-LVNLDPACREVPYPANIDIRDTVDYKEVM-- 424
+++G AG+GK+++ + + ++ R +VNLDPAC YPA +D+RD + +V
Sbjct: 6 LVMGPAGSGKSTYCSVMYNHCLSTGRTLRMVNLDPACEVFNYPAVVDVRDLISVNDVQED 65
Query: 425 KQYGLGPNGGIVTALNLFSTKFGQVVDLIEKAGKKHKYCVIDTPGQIEVFTWSASGTIVT 604
++ LGPNG +V + + D +++ + Y VID PGQIE+++ +
Sbjct: 66 EELILGPNGALVFCMEYLVQNLEWLHDELDEG--EDDYFVIDCPGQIELYSHLPVMRQIV 123
Query: 605 ETLAS-SCPTVVVYVMDTVRSVSPVTFMSNMLYACSILYKTRLPFIVVMNKIDVVN 769
+ L S V+++DT + F+S L A S + P I V+ K+D+++
Sbjct: 124 DALKSWDFNVCSVFLIDTNFVLDAEKFISGALTALSAMVAIETPAINVLTKMDLLS 179
>U97196-2|AAB52461.2| 268|Caenorhabditis elegans Hypothetical
protein B0207.6 protein.
Length = 268
Score = 78.2 bits (184), Expect = 1e-14
Identities = 47/173 (27%), Positives = 85/173 (49%), Gaps = 2/173 (1%)
Frame = +2
Query: 251 LIILGMAGAGKTSFTRRLSSKVINGSRPYL-VNLDPACREVPYPANIDIRDTVDYKEVMK 427
++++G GAGK++F L+ RP+L +NLDPA + Y +++I + + +VM
Sbjct: 4 VLVIGAPGAGKSTFCAGLTDIFSQTKRPFLTINLDPANDTMAYAPDVNITEMITVNDVMD 63
Query: 428 QYGLGPNGGIVTALNLFSTKFGQVVDLIEKAGKKHKYCVIDTPGQIEVFTWSASGTIVTE 607
+ GLGPNG + + ++ IE K KY +ID PGQ+E++ V
Sbjct: 64 RLGLGPNGALKYCIETLGANCNWLLQKIEANHK--KYLIIDCPGQLELYKSEGELWKVIR 121
Query: 608 TL-ASSCPTVVVYVMDTVRSVSPVTFMSNMLYACSILYKTRLPFIVVMNKIDV 763
L S +++ D++ P F+S L + + +P + ++K D+
Sbjct: 122 FLEKSGVRLCALHLADSLYCSDPSKFISVALSTLATMVTMEMPQVNCLSKADL 174
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 31.9 bits (69), Expect = 0.99
Identities = 26/89 (29%), Positives = 40/89 (44%)
Frame = +2
Query: 494 QVVDLIEKAGKKHKYCVIDTPGQIEVFTWSASGTIVTETLASSCPTVVVYVMDTVRSVSP 673
QV ++ K + +IDTPG E F+ T SS + V+D + + P
Sbjct: 537 QVRGFLQDQMKIPGFLIIDTPGH-ESFS-------NLRTRGSSLCDFAILVVDIMHGLEP 588
Query: 674 VTFMSNMLYACSILYKTRLPFIVVMNKID 760
T S +L K + PF++ +NKID
Sbjct: 589 QTIES-----LKLLIKGKTPFVIALNKID 612
>U80445-11|AAB37801.2| 479|Caenorhabditis elegans Hypothetical
protein C50F2.8 protein.
Length = 479
Score = 31.5 bits (68), Expect = 1.3
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 2/114 (1%)
Frame = +2
Query: 251 LIILGMAGAGKTSFTRRLSSKVINGSRPYLVNLDPACREVPYPANIDIRDTVDYKEVMKQ 430
L++LG G G+ R + S ++ + Y + P P ++ R+ Y+ V K+
Sbjct: 286 LVLLGAVGTGR----RDIKSMLLRLAPHYFSTIVPLTSRAQRPGEVEGRE---YQFVRKE 338
Query: 431 --YGLGPNGGIVTALNLFSTKFGQVVDLIEKAGKKHKYCVIDTPGQIEVFTWSA 586
Y GG+V L S +G D + + + CV+D Q + ++A
Sbjct: 339 EIYQKIREGGMVEWGELDSQLYGTSADSVRNEIRSGRMCVLDAAPQSVNYLYNA 392
>U61944-5|AAB03121.2| 482|Caenorhabditis elegans Hypothetical
protein T12E12.1 protein.
Length = 482
Score = 29.9 bits (64), Expect = 4.0
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 793 ERFRSFPRSIKCRWWGRDGRRKYLHRKLDTVHGTGVG-QFLFRSEVLWCECAY 948
ERF + +S+K RD RK + K++ +GT + Q+L +S L +C Y
Sbjct: 360 ERFENHSKSLKMEEELRDKIRKKIDDKVNEHNGTWIDWQYLHKSVSLLTKCRY 412
>AF039041-7|ABM01867.1| 335|Caenorhabditis elegans G protein, alpha
subunit protein 18 protein.
Length = 335
Score = 29.5 bits (63), Expect = 5.3
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 242 PICLIILGMAGAGKTSFTRRL 304
PI ++LG GAGKTSF R++
Sbjct: 11 PIRTLVLGCMGAGKTSFIRQM 31
>L26987-1|AAA62312.1| 627|Caenorhabditis elegans par-2 protein.
Length = 627
Score = 29.1 bits (62), Expect = 7.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 245 ICLIILGMAGAGKTSFTRRLSSKVINGS 328
I L++ G +GAGKT+F R + + G+
Sbjct: 421 ITLVVFGHSGAGKTTFVRAIRQLFLEGT 448
>AF106580-1|AAK73890.3| 582|Caenorhabditis elegans Abnormal
embryonic partitioningof cytoplasm protein 2, isoform b
protein.
Length = 582
Score = 29.1 bits (62), Expect = 7.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 245 ICLIILGMAGAGKTSFTRRLSSKVINGS 328
I L++ G +GAGKT+F R + + G+
Sbjct: 376 ITLVVFGHSGAGKTTFVRAIRQLFLEGT 403
>Z81508-1|CAB04142.1| 331|Caenorhabditis elegans Hypothetical
protein F20E11.1 protein.
Length = 331
Score = 28.7 bits (61), Expect = 9.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 568 FYLTWCIDNTVLVFLSRFLY 509
F +TWCI N ++VF+S LY
Sbjct: 190 FLMTWCI-NDIIVFISALLY 208
>Z48621-11|CAE17932.2| 212|Caenorhabditis elegans Hypothetical
protein R07B1.12 protein.
Length = 212
Score = 28.7 bits (61), Expect = 9.2
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 251 LIILGMAGAGKTSFTRRLSSKVINGSRPYLVNLDPACREVPYPAN 385
++++G G GKTS RR V + + + +D A + +P N
Sbjct: 14 VLVIGDPGVGKTSIIRRFVHNVFSSNYKTTIGVDFALKILPVDEN 58
>U80025-2|AAD32270.3| 806|Caenorhabditis elegans Hypothetical
protein F02C9.2 protein.
Length = 806
Score = 28.7 bits (61), Expect = 9.2
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 517 SGKETQVLCYRYTRSNRSVHMVSIRHNSDRNTGVILSHSRS 639
+G ETQVLCY+ R+ +V + H+ D + L H+ S
Sbjct: 213 NGNETQVLCYKMKRA--AVQQGLVHHDPDVDAIYRLQHADS 251
>DQ016970-1|AAY42967.1| 212|Caenorhabditis elegans Rab GTPase GLO-1
protein.
Length = 212
Score = 28.7 bits (61), Expect = 9.2
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 251 LIILGMAGAGKTSFTRRLSSKVINGSRPYLVNLDPACREVPYPAN 385
++++G G GKTS RR V + + + +D A + +P N
Sbjct: 14 VLVIGDPGVGKTSIIRRFVHNVFSSNYKTTIGVDFALKILPVDEN 58
>AL117207-13|CAB60393.2| 327|Caenorhabditis elegans Hypothetical
protein Y60A3A.4 protein.
Length = 327
Score = 28.7 bits (61), Expect = 9.2
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = +2
Query: 623 CPTVVVYVM------DTVRSVSPVTFMSNMLYACSILYKTRLPFIVV 745
CP ++++V+ RS SP T +L+ ++ ++ +PF+V+
Sbjct: 203 CPQIILFVLLIFRYLTQTRSQSPATLRLQLLFFIAMCFQLSIPFLVI 249
>AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transporter
family protein 4 protein.
Length = 1802
Score = 28.7 bits (61), Expect = 9.2
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 188 KMSSDTNKPEGSNAEPNKPICLIILGMAGAGKTSFTRRLSSK 313
K + N +G N N C +LG+ GAGKTS + L+ +
Sbjct: 1457 KWYGNFNAVKGVNFHVNSKDCFGLLGVNGAGKTSTFQMLTGE 1498
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,512,906
Number of Sequences: 27780
Number of extensions: 507871
Number of successful extensions: 1489
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1480
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3516412346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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