Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_B17
         (1264 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   2.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    24   2.4  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   5.6  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   5.6  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 478 FNKIWTSRRLDRESGKETQVL 540
           F + W  RRL  + GKET  L
Sbjct: 57  FRQSWVDRRLAFQGGKETLAL 77


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 344 NLDPACREVPYPAN 385
           NLDP+ R++P PAN
Sbjct: 384 NLDPSNRKLPAPAN 397


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -1

Query: 478 KQIQCCNYTTIWSKTILLHHFFIVYSISYIN 386
           K+  CC  + +  + I LHH +    I  +N
Sbjct: 89  KECYCCRESYLKERHITLHHCYDADGIKLMN 119


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -1

Query: 478 KQIQCCNYTTIWSKTILLHHFFIVYSISYIN 386
           K+  CC  + +  + I LHH +    I  +N
Sbjct: 89  KECYCCRESYLKERHITLHHCYDADGIKLMN 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 288,884
Number of Sequences: 438
Number of extensions: 6657
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43222680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)