Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_B16
(1280 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical pr... 103 4e-22
AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal... 103 4e-22
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.8
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 31 1.8
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 4.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 4.1
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 4.1
Z75550-7|CAA99925.2| 195|Caenorhabditis elegans Hypothetical pr... 29 5.4
>Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical
protein C09H10.2 protein.
Length = 105
Score = 103 bits (246), Expect = 4e-22
Identities = 49/96 (51%), Positives = 64/96 (66%)
Frame = +2
Query: 119 GRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVL 298
G+ K+ N K T+Y K ++ + RRRYDRKQ G+GGQ+KPIF IVL
Sbjct: 14 GKCRKHTNH-KVTQY---KKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVL 69
Query: 299 RLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 406
R+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 70 RMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105
Score = 31.9 bits (69), Expect = 1.0
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 94 MVNVPKQRRTY-XXXXXXXXXXXXSQYKKSKERHAAQG 204
MVNVPK RRT+ +QYKK KE AQG
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQG 38
>AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal
protein L44 L41 protein.
Length = 105
Score = 103 bits (246), Expect = 4e-22
Identities = 49/96 (51%), Positives = 64/96 (66%)
Frame = +2
Query: 119 GRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVL 298
G+ K+ N K T+Y K ++ + RRRYDRKQ G+GGQ+KPIF IVL
Sbjct: 14 GKCRKHTNH-KVTQY---KKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVL 69
Query: 299 RLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 406
R+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 70 RMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105
Score = 31.9 bits (69), Expect = 1.0
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 94 MVNVPKQRRTY-XXXXXXXXXXXXSQYKKSKERHAAQG 204
MVNVPK RRT+ +QYKK KE AQG
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQG 38
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 31.1 bits (67), Expect = 1.8
Identities = 18/60 (30%), Positives = 20/60 (33%)
Frame = +1
Query: 1048 PXVXPXXPPXXPPVPTXXXXXSXPPFPXGXXGXFXXPXXXFPXRXGXPPXRGGXXTPXXP 1227
P P P PP+P PP P G + P P R PP G P P
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRPP-PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPP 322
Score = 29.1 bits (62), Expect = 7.1
Identities = 20/60 (33%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Frame = +1
Query: 1060 PXXPPXXPPVPTXXXXXSXPPFP----XGXXGXFXXPXXXFPXRXGXPPXRGGXXTPXXP 1227
P P PP P+ PP P G G P P R G PP GG P P
Sbjct: 281 PGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFG-PPGMGGMPPPPPP 339
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 31.1 bits (67), Expect = 1.8
Identities = 18/60 (30%), Positives = 20/60 (33%)
Frame = +1
Query: 1048 PXVXPXXPPXXPPVPTXXXXXSXPPFPXGXXGXFXXPXXXFPXRXGXPPXRGGXXTPXXP 1227
P P P PP+P PP P G + P P R PP G P P
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRPP-PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPP 332
Score = 29.1 bits (62), Expect = 7.1
Identities = 20/60 (33%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Frame = +1
Query: 1060 PXXPPXXPPVPTXXXXXSXPPFP----XGXXGXFXXPXXXFPXRXGXPPXRGGXXTPXXP 1227
P P PP P+ PP P G G P P R G PP GG P P
Sbjct: 291 PGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFG-PPGMGGMPPPPPP 349
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 31.1 bits (67), Expect = 1.8
Identities = 16/56 (28%), Positives = 17/56 (30%)
Frame = +1
Query: 1060 PXXPPXXPPVPTXXXXXSXPPFPXGXXGXFXXPXXXFPXRXGXPPXRGGXXTPXXP 1227
P PP P P + PP P G G P P P G P P
Sbjct: 131 PLTPPPCKPCPEGPPGPAGPPGPDGNKGPLGPPGPPGPEGPNGEPGNKGPAGPPGP 186
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 4.1
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +1
Query: 1069 PPXXPPVPTXXXXXSXPPFPXGXXGXFXXPXXXFPXRXGXPPXRGGXXTPXXP 1227
PP P +P PP P G P P G PP GG P P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPP-PPPGGLPPISGGPPPPPPP 764
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 4.1
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +1
Query: 1069 PPXXPPVPTXXXXXSXPPFPXGXXGXFXXPXXXFPXRXGXPPXRGGXXTPXXP 1227
PP P +P PP P G P P G PP GG P P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPP-PPPGGLPPISGGPPPPPPP 764
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 4.1
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +1
Query: 1069 PPXXPPVPTXXXXXSXPPFPXGXXGXFXXPXXXFPXRXGXPPXRGGXXTPXXP 1227
PP P +P PP P G P P G PP GG P P
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPP-PPPGGLPPISGGPPPPPPP 347
>Z75550-7|CAA99925.2| 195|Caenorhabditis elegans Hypothetical
protein T22C1.9 protein.
Length = 195
Score = 29.5 bits (63), Expect = 5.4
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 227 VYDHNVFXPWA-ACLSLDFLYCDTLCTLWHL 138
+YDH+ + W +S+ F++C C +W +
Sbjct: 27 IYDHHYYPMWFWIVISVGFVFCTLSCAVWFM 57
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,895,351
Number of Sequences: 27780
Number of extensions: 325390
Number of successful extensions: 1232
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3579019094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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