Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_B15
         (1252 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    91   4e-19
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    31   0.33 
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    28   2.3  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    26   9.5  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 90.6 bits (215), Expect = 4e-19
 Identities = 59/158 (37%), Positives = 83/158 (52%), Gaps = 1/158 (0%)
 Frame = +1

Query: 418 RIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTS 597
           ++R +L  GTVCILLAGR  GKRVV++  L    L+VTGP+  N  P+RR+  RYVI TS
Sbjct: 47  KLRASLAPGTVCILLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIATS 105

Query: 598 T-RISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRKTDQKTV 774
             +I +    + K F   YF              + +  FA    K     +R  DQK V
Sbjct: 106 APKIDVSGVSVEK-FTKAYF----AKQKRSGPVKKDEAFFAENAPKNALPAERIADQKAV 160

Query: 775 DEAVIKAIGARPDKKVLRGYLKAAFGLRSSQYPHRLRF 888
           D  ++ AI A P+   ++ YL A+F L +   PH ++F
Sbjct: 161 DAKLLPAIKAIPN---MKEYLAASFALSNGDRPHLMKF 195


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -3

Query: 500 PTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARIFS 366
           P S+ + P  LP+RR +T  I  L  ++  CLL    P  +R FS
Sbjct: 21  PESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRASRAFS 65


>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 18/46 (39%), Positives = 29/46 (63%)
 Frame = +2

Query: 629 QNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 766
           +NTS  +T   IRS SN   + K + T LP+ K+N F  S+++P++
Sbjct: 180 ENTSGDLT---IRSDSNY--SIKSLTTWLPKWKKNDFKTSNSQPVK 220


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
 Frame = +2

Query: 536 LLHSIRARYAAFLSAM*SAPPPEFHSATSNCQNTSMMITSRRI----RSASNVQSNAKRV 703
           LLHS +  +++F S +    P E   A +     +  +TS+ +     +A  V+S  K  
Sbjct: 500 LLHSSK-NFSSFSSKI----PDERLGALNYLLEVTEYLTSKTVDLPRSTADEVESVIKLE 554

Query: 704 MTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADTSRRPSDSA 859
           + S+P  K+N F      P +    RL  K +      R  AD  RR S++A
Sbjct: 555 LESIPVAKQNAF--GGVPPFKESQYRLFHKRAS-----RGMADLLRRKSEAA 599


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,972,046
Number of Sequences: 5004
Number of extensions: 78427
Number of successful extensions: 269
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 677627698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)