Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_B15
         (1252 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379...   125   6e-29
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...   109   3e-24
09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664     31   1.9  
02_02_0470 - 10700092-10700505                                         30   4.4  
02_04_0413 + 22681957-22682035,22682253-22682788                       29   5.8  
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489...    29   5.8  
02_02_0471 - 10714440-10714846,10714947-10715034,10715427-107155...    29   5.8  
06_01_0226 - 1730931-1731527,1732290-1732469                           29   7.7  

>04_04_0211 -
           23636377-23636532,23636624-23636805,23637853-23637959,
           23637997-23638280
          Length = 242

 Score =  125 bits (302), Expect = 6e-29
 Identities = 95/251 (37%), Positives = 128/251 (50%), Gaps = 8/251 (3%)
 Frame = +1

Query: 160 TLSLGNGVLRFSKSKLFHKQAQXKFIGKKH----PKPEQPKQLTVVVKQXGGXXHGGTXT 327
           T  L  G+ + S+S  +H++     I  KH    PK E+P                    
Sbjct: 4   TSKLSQGIKKASRSHTYHRRGLWA-IKAKHGGAFPKAEKPAAAAAAAAPKFYPADDVKPR 62

Query: 328 VPLKRRKSFYPTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 501
            P  R+ +  PT+ +  +SS    FS  + +  +R ++  GTV ILLAGR  GKRVV + 
Sbjct: 63  QPSTRKPN--PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLK 120

Query: 502 ILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYFXXXXXXXXX 681
            L SGLLLVTGPF  N  P+RR+ Q YVI TST++ +    + K F+D YF         
Sbjct: 121 QLKSGLLLVTGPFKINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYF---SRDKKQ 176

Query: 682 XXXXXEGDDIFATKKE--KYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGL 855
                EG ++F T+KE  K +P E +K DQK VD  +IKAI A PD   L+ YL A F L
Sbjct: 177 KAKKTEG-ELFETEKEATKNLP-EFKKEDQKVVDAELIKAIEAVPD---LKTYLGARFSL 231

Query: 856 RSSQYPHRLRF 888
           R    PH + F
Sbjct: 232 RDGDKPHEMVF 242


>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score =  109 bits (263), Expect = 3e-24
 Identities = 75/177 (42%), Positives = 102/177 (57%), Gaps = 3/177 (1%)
 Frame = +1

Query: 352 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 528
           FYP  + K RA S  +    +  ++R  +  GTV ILLAGR+ GKRVV +  L SGLLL+
Sbjct: 50  FYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLI 106

Query: 529 TGPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDD 708
           TGPF  N  P+RR+ Q YVI TST++ +   K+ K F+D YF              EG +
Sbjct: 107 TGPFKINGVPIRRVNQAYVIATSTKVDISGVKVDK-FDDKYF---ARDKKAKAKKTEG-E 161

Query: 709 IFATKKE--KYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSSQYP 873
           +F T+KE  K +P + +K DQK VD  +IKAI   PD       LK+  G R+S++P
Sbjct: 162 LFETEKEATKNLP-DFKKDDQKAVDAELIKAIEVVPD-------LKSYLGARNSRWP 210


>09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664
          Length = 332

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 323 LVPPCXXPPXCFTTTVSCLGCSGLGCFLPMNL 228
           L+PP   PP    TT  C  C   GCF+P+ +
Sbjct: 13  LLPPPPLPPVAVPTTCGCAACL-QGCFVPVGV 43


>02_02_0470 - 10700092-10700505
          Length = 137

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 433 LKIGTVCILLAGRHAGKRVVLVGILPSG 516
           LK G   ILL GR+AG++ V+V +   G
Sbjct: 5   LKPGKAVILLQGRYAGRKAVIVRVFEEG 32


>02_04_0413 + 22681957-22682035,22682253-22682788
          Length = 204

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -3

Query: 314 PCXXPPXCFTTTVSCL-GCSGLGC 246
           PC  PP C +    C  GCSG GC
Sbjct: 101 PCVHPPCCESAAGCCCNGCSGGGC 124


>02_03_0307 +
           17546263-17546299,17546522-17548018,17548859-17548949,
           17549054-17549621,17550591-17550670,17550993-17551077,
           17551172-17551263,17551355-17551423,17551587-17551655,
           17552217-17552510,17552761-17552797,17552883-17552972,
           17553520-17553585,17553704-17553818,17553902-17553940,
           17554519-17554700
          Length = 1136

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 566 AFLSAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSN 691
           AFL+ +   PP + H     C N S++I   R +   N QSN
Sbjct: 544 AFLNLVAKFPPTKRHINAEACSNLSLLIDDMRRKLNLNEQSN 585


>02_02_0471 -
           10714440-10714846,10714947-10715034,10715427-10715516,
           10715614-10715727
          Length = 232

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 117 AVAASKAWPPLEAVLEPDAXPGDEKKAEMKEGP 19
           A AA++A PP+EA   P A      KAE +E P
Sbjct: 198 APAAAEAEPPVEAAATPAAAEAAPAKAEEEEAP 230


>06_01_0226 - 1730931-1731527,1732290-1732469
          Length = 258

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 800 EPDPTRRCSADTSRRPSDSAPANIPIG 880
           EPDP    +A + RRPS  AP   P G
Sbjct: 139 EPDPEPEDAAASGRRPSSPAPEQEPAG 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,860,465
Number of Sequences: 37544
Number of extensions: 620039
Number of successful extensions: 1864
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1861
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3864364464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)