Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_B15
(1252 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 142 4e-34
Z83102-9|CAI79156.1| 82|Caenorhabditis elegans Hypothetical pr... 31 1.7
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 30 3.9
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 30 3.9
U58762-3|AAM15611.1| 331|Caenorhabditis elegans Hypothetical pr... 29 5.2
U58762-2|AAK39302.1| 722|Caenorhabditis elegans Hypothetical pr... 29 5.2
U58762-1|AAK39301.1| 732|Caenorhabditis elegans Hypothetical pr... 29 5.2
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 142 bits (345), Expect = 4e-34
Identities = 76/157 (48%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Frame = +1
Query: 421 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVICTS 597
+R L GTV I+LAGRH GKRVV + LP SGLLLVTGP N PLRRI Q +VI TS
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126
Query: 598 TRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRKTDQKTVD 777
++++ K+P+H ND+YF G +IFA+ K +Y SEQRK D KTVD
Sbjct: 127 LKVNVSGVKIPEHINDEYFKRKSTAQKT------GKNIFASGKTEYTVSEQRKKDIKTVD 180
Query: 778 EAVIKAIGARPDKKVLRGYLKAAFGLRSSQYPHRLRF 888
++ AI P+ K L GYL F L +QYPH+++F
Sbjct: 181 APILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHKMQF 217
>Z83102-9|CAI79156.1| 82|Caenorhabditis elegans Hypothetical
protein C54C8.12 protein.
Length = 82
Score = 31.1 bits (67), Expect = 1.7
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 352 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 486
FYPT+ +A S G P + PN ++ V A RHAG R
Sbjct: 26 FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 29.9 bits (64), Expect = 3.9
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Frame = +2
Query: 647 ITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLS-----SAKPIRRQSTRL*SKPSEPDP 811
+ RR S N Q +++ + L +++ + S S P R++ R PS+ P
Sbjct: 455 VRRRRSPSPDNRQLGSRKQYSPLRRRQSSPMVASPRRRRSPSPERQRKRR---SPSDSPP 511
Query: 812 TRRCSADTSRRPSDSAPANIPI 877
TRR S RR +P +P+
Sbjct: 512 TRRLSTSPIRRRRSPSPNKLPV 533
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 29.9 bits (64), Expect = 3.9
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Frame = +2
Query: 647 ITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLS-----SAKPIRRQSTRL*SKPSEPDP 811
+ RR S N Q +++ + L +++ + S S P R++ R PS+ P
Sbjct: 455 VRRRRSPSPDNRQLGSRKQYSPLRRRQSSPMVASPRRRRSPSPERQRKRR---SPSDSPP 511
Query: 812 TRRCSADTSRRPSDSAPANIPI 877
TRR S RR +P +P+
Sbjct: 512 TRRLSTSPIRRRRSPSPNKLPV 533
>U58762-3|AAM15611.1| 331|Caenorhabditis elegans Hypothetical
protein T27F7.2c protein.
Length = 331
Score = 29.5 bits (63), Expect = 5.2
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = +2
Query: 668 SASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADTSRRP 847
S+S N KR+ T PQ L +R ++ P EP PT C+A T+
Sbjct: 58 SSSTSSVNPKRMSTIEPQAPTREQLLQLQNQMRCAASS--PVPEEPRPTDLCAASTTTST 115
Query: 848 SDSAPANIPIGCASKS 895
S A ++ G +S +
Sbjct: 116 SSVASSSSSNGSSSST 131
>U58762-2|AAK39302.1| 722|Caenorhabditis elegans Hypothetical
protein T27F7.2b protein.
Length = 722
Score = 29.5 bits (63), Expect = 5.2
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = +2
Query: 668 SASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADTSRRP 847
S+S N KR+ T PQ L +R ++ P EP PT C+A T+
Sbjct: 427 SSSTSSVNPKRMSTIEPQAPTREQLLQLQNQMRCAASS--PVPEEPRPTDLCAASTTTST 484
Query: 848 SDSAPANIPIGCASKS 895
S A ++ G +S +
Sbjct: 485 SSVASSSSSNGSSSST 500
>U58762-1|AAK39301.1| 732|Caenorhabditis elegans Hypothetical
protein T27F7.2a protein.
Length = 732
Score = 29.5 bits (63), Expect = 5.2
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = +2
Query: 668 SASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADTSRRP 847
S+S N KR+ T PQ L +R ++ P EP PT C+A T+
Sbjct: 437 SSSTSSVNPKRMSTIEPQAPTREQLLQLQNQMRCAASS--PVPEEPRPTDLCAASTTTST 494
Query: 848 SDSAPANIPIGCASKS 895
S A ++ G +S +
Sbjct: 495 SSVASSSSSNGSSSST 510
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,877,018
Number of Sequences: 27780
Number of extensions: 477802
Number of successful extensions: 1447
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3474674514
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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