Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_B13
         (1350 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    29   1.5  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   7.9  

>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 392 RRRAGFAFEFTFVTMLCIXRHCYXLCDFSVCH 297
           R R+ F F F +   + +   CY +C + VC+
Sbjct: 552 RSRSAFEFSFVYDNEIVLFDTCYMVCTYIVCN 583


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 708 LYSLDCVHPCHFQTAFDQDPETDFQSHRHHYPA 610
           LY+ + VHP    T    D  T  +S  +HYPA
Sbjct: 493 LYTTEPVHPHAVTTNEPTDVSTKSKSAAYHYPA 525


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,371,599
Number of Sequences: 5004
Number of extensions: 56389
Number of successful extensions: 140
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 743204572
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)