Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_B13
         (1350 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058529-1|AAL13758.1|  226|Drosophila melanogaster LD23602p pro...    46   9e-05
AF296281-1|AAG17893.1|  226|Drosophila melanogaster survival mot...    46   9e-05
AE014296-2759|AAF49446.1|  226|Drosophila melanogaster CG16725-P...    46   9e-05
AY069766-1|AAL39911.1|  836|Drosophila melanogaster RE01471p pro...    42   0.003
AE014296-2431|AAF49703.1|  836|Drosophila melanogaster CG13472-P...    42   0.003
AY061350-1|AAL28898.1|  243|Drosophila melanogaster LD28068p pro...    32   2.1  

>AY058529-1|AAL13758.1|  226|Drosophila melanogaster LD23602p
           protein.
          Length = 226

 Score = 46.4 bits (105), Expect = 9e-05
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
 Frame = +3

Query: 390 SSNKKETEWKAGMPCRAVYEGDGLEYEAFILRVISDT-ECVVRFLGYENSELVPLNALKP 566
           +++ +   +K G   RA Y  DG++YE  ++ +  +   CV+R+LGYEN + V L  L P
Sbjct: 62  ATSPEPVSFKVGDYARATYV-DGVDYEGAVVSINEEKGTCVLRYLGYENEQEVLLVDLLP 120

Query: 567 SLGNEERTRQIEEALQDNGD 626
           S G   R  Q   A +D  +
Sbjct: 121 SWGKRVRREQFLIAKKDEDE 140



 Score = 34.3 bits (75), Expect = 0.39
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +2

Query: 884 DSEQQAISSMLLXXYMXGYXTGLYQGMK 967
           D  +Q   +ML   YM GY TGLYQG K
Sbjct: 185 DGAEQDFVAMLTAWYMSGYYTGLYQGKK 212


>AF296281-1|AAG17893.1|  226|Drosophila melanogaster survival motor
           neuron protein SMN protein.
          Length = 226

 Score = 46.4 bits (105), Expect = 9e-05
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
 Frame = +3

Query: 390 SSNKKETEWKAGMPCRAVYEGDGLEYEAFILRVISDT-ECVVRFLGYENSELVPLNALKP 566
           +++ +   +K G   RA Y  DG++YE  ++ +  +   CV+R+LGYEN + V L  L P
Sbjct: 62  ATSPEPVSFKVGDYARATYV-DGVDYEGAVVSINEEKGTCVLRYLGYENEQEVLLVDLLP 120

Query: 567 SLGNEERTRQIEEALQDNGD 626
           S G   R  Q   A +D  +
Sbjct: 121 SWGKRVRREQFLIAKKDEDE 140



 Score = 34.3 bits (75), Expect = 0.39
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +2

Query: 884 DSEQQAISSMLLXXYMXGYXTGLYQGMK 967
           D  +Q   +ML   YM GY TGLYQG K
Sbjct: 185 DGAEQDFVAMLTAWYMSGYYTGLYQGKK 212


>AE014296-2759|AAF49446.1|  226|Drosophila melanogaster CG16725-PA
           protein.
          Length = 226

 Score = 46.4 bits (105), Expect = 9e-05
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
 Frame = +3

Query: 390 SSNKKETEWKAGMPCRAVYEGDGLEYEAFILRVISDT-ECVVRFLGYENSELVPLNALKP 566
           +++ +   +K G   RA Y  DG++YE  ++ +  +   CV+R+LGYEN + V L  L P
Sbjct: 62  ATSPEPVSFKVGDYARATYV-DGVDYEGAVVSINEEKGTCVLRYLGYENEQEVLLVDLLP 120

Query: 567 SLGNEERTRQIEEALQDNGD 626
           S G   R  Q   A +D  +
Sbjct: 121 SWGKRVRREQFLIAKKDEDE 140



 Score = 34.3 bits (75), Expect = 0.39
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +2

Query: 884 DSEQQAISSMLLXXYMXGYXTGLYQGMK 967
           D  +Q   +ML   YM GY TGLYQG K
Sbjct: 185 DGAEQDFVAMLTAWYMSGYYTGLYQGKK 212


>AY069766-1|AAL39911.1|  836|Drosophila melanogaster RE01471p
           protein.
          Length = 836

 Score = 41.5 bits (93), Expect = 0.003
 Identities = 31/91 (34%), Positives = 40/91 (43%)
 Frame = +3

Query: 414 WKAGMPCRAVYEGDGLEYEAFILRVISDTECVVRFLGYENSELVPLNALKPSLGNEERTR 593
           W+ G  C A Y  DG  YEA I  V S+  CVV F+GY N E V    + P    + + R
Sbjct: 732 WQKGDLCMAKYWDDGRYYEAEITGV-SEKTCVVFFMGYGNHEEVLKVDILPI--TDAQNR 788

Query: 594 QIEEALQDNGDDGFGSQSPDLDRMQFGSDRG 686
            +  + Q         Q P L + Q    RG
Sbjct: 789 PLSNSAQQQ-QPHLQQQQPHLQQQQHSRYRG 818


>AE014296-2431|AAF49703.1|  836|Drosophila melanogaster CG13472-PA
           protein.
          Length = 836

 Score = 41.5 bits (93), Expect = 0.003
 Identities = 31/91 (34%), Positives = 40/91 (43%)
 Frame = +3

Query: 414 WKAGMPCRAVYEGDGLEYEAFILRVISDTECVVRFLGYENSELVPLNALKPSLGNEERTR 593
           W+ G  C A Y  DG  YEA I  V S+  CVV F+GY N E V    + P    + + R
Sbjct: 732 WQKGDLCMAKYWDDGRYYEAEITGV-SEKTCVVFFMGYGNHEEVLKVDILPI--TDAQNR 788

Query: 594 QIEEALQDNGDDGFGSQSPDLDRMQFGSDRG 686
            +  + Q         Q P L + Q    RG
Sbjct: 789 PLSNSAQQQ-QPHLQQQQPHLQQQQHSRYRG 818


>AY061350-1|AAL28898.1|  243|Drosophila melanogaster LD28068p
           protein.
          Length = 243

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 414 WKAGMPCRAVYEGDGLEYEAFILRVISDTECVVRFLGYENSELVPLNALK 563
           WK G  C+A ++ D   Y+A I  + S  E  V F  Y+N     +N L+
Sbjct: 92  WKKGDKCQAKWKEDRQYYDATIEDISSTGEVNVIFDAYQNRSTTHVNELR 141


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,152,832
Number of Sequences: 53049
Number of extensions: 663892
Number of successful extensions: 1768
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1766
length of database: 24,988,368
effective HSP length: 87
effective length of database: 20,373,105
effective search space used: 7375064010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)