Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_B13
         (1350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81048-7|CAC42273.1|  207|Caenorhabditis elegans Hypothetical pr...    37   0.028
Z81048-6|CAB02838.1|  197|Caenorhabditis elegans Hypothetical pr...    37   0.028
Y17255-1|CAB41945.1|  197|Caenorhabditis elegans SMN protein pro...    37   0.028
AF156887-1|AAF00192.1|  207|Caenorhabditis elegans survival moto...    37   0.028
Z83122-3|CAB05596.1|  113|Caenorhabditis elegans Hypothetical pr...    29   9.9  

>Z81048-7|CAC42273.1|  207|Caenorhabditis elegans Hypothetical
           protein C41G7.1b protein.
          Length = 207

 Score = 37.1 bits (82), Expect = 0.028
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +2

Query: 857 PMNFTSXNXDSEQQAISSMLLXXYMXGYXTGLYQGMKXSKEI 982
           P N  +    ++++A++SML+  YM GY TG YQ +   K +
Sbjct: 164 PPNIIAMAPVNQKEAMNSMLMSWYMSGYHTGYYQALADQKNV 205


>Z81048-6|CAB02838.1|  197|Caenorhabditis elegans Hypothetical
           protein C41G7.1a protein.
          Length = 197

 Score = 37.1 bits (82), Expect = 0.028
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +2

Query: 857 PMNFTSXNXDSEQQAISSMLLXXYMXGYXTGLYQGMKXSKEI 982
           P N  +    ++++A++SML+  YM GY TG YQ +   K +
Sbjct: 154 PPNIIAMAPVNQKEAMNSMLMSWYMSGYHTGYYQALADQKNV 195


>Y17255-1|CAB41945.1|  197|Caenorhabditis elegans SMN protein
           protein.
          Length = 197

 Score = 37.1 bits (82), Expect = 0.028
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +2

Query: 857 PMNFTSXNXDSEQQAISSMLLXXYMXGYXTGLYQGMKXSKEI 982
           P N  +    ++++A++SML+  YM GY TG YQ +   K +
Sbjct: 154 PPNIIAMAPVNQKEAMNSMLMSWYMSGYHTGYYQALADQKNV 195


>AF156887-1|AAF00192.1|  207|Caenorhabditis elegans survival motor
           neuron protein protein.
          Length = 207

 Score = 37.1 bits (82), Expect = 0.028
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +2

Query: 857 PMNFTSXNXDSEQQAISSMLLXXYMXGYXTGLYQGMKXSKEI 982
           P N  +    ++++A++SML+  YM GY TG YQ +   K +
Sbjct: 164 PPNIIAMAPVNQKEAMNSMLMSWYMSGYHTGYYQALADQKNV 205


>Z83122-3|CAB05596.1|  113|Caenorhabditis elegans Hypothetical
           protein R11A5.6 protein.
          Length = 113

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 621 GDDGFGSQSPDLDRMQFGSDRGVHSPESTD 710
           G+DG G + P +D  +F   +G H P+  +
Sbjct: 57  GEDGEGCKQPRVDIKKFRKKKGAHKPQEPE 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,347,498
Number of Sequences: 27780
Number of extensions: 338435
Number of successful extensions: 721
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3798437470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)