Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_B09
         (1281 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...   305   1e-83
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    29   1.4  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    29   1.8  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    28   2.4  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    28   2.4  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    27   7.4  
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    26   9.7  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    26   9.7  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   9.7  

>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score =  305 bits (748), Expect = 1e-83
 Identities = 149/278 (53%), Positives = 194/278 (69%)
 Frame = +1

Query: 127 FEPLEPSLKNVIDQKSLRWIFXXXXXXXXXXXCSCSLAVQLSKVRESVLIISTDPAHNIS 306
           F+PL  +L+N+++Q SL+WIF            SCSLA+Q+SKVR SVL+ISTDPAHN+S
Sbjct: 3   FDPLPGTLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLS 62

Query: 307 DAFDQKFSKVPTKVKGFDNLFAMEIDPNVGLTELPEEYFEGESEAMRLDKGVMQEIVGAF 486
           DAF  KF K   KV GFDNL AMEIDPN+ + E+ E+    +        G+MQ++    
Sbjct: 63  DAFGTKFGKDARKVPGFDNLSAMEIDPNLSIQEMTEQ--ADQQNPNNPLSGMMQDLAFTI 120

Query: 487 PGIDEAMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRLLSFPQVVERGLGKLMRLKSKVAP 666
           PGIDEA+++AE++K +K M F  V+FDTAPTGHTLR L+FP V+E+ LGKL  L S+  P
Sbjct: 121 PGIDEALAFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFPTVLEKALGKLGGLSSRFGP 180

Query: 667 FINQIASLFGLADFNSDMFSNKMDEMLSVIRQVNAQFKDPNQTTFVCVCIAEFLSLYETE 846
            INQ+ S+ G+     D+F  KM+ M + I +VN QFK+P+ TTFVCVCI+EFLSLYETE
Sbjct: 181 MINQMGSIMGVNANEQDLF-GKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETE 239

Query: 847 RLVQELTRCGIDTHNIIVNQLLLRSSAPGELCAARHKV 960
           R++QELT   IDTHNI+VNQLLL  +     C AR K+
Sbjct: 240 RMIQELTSYEIDTHNIVVNQLLLDPNTTCPQCMARRKM 277


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 188 SLEGKAELGKLRAVAVSQFSCRKFANLC*SYQLILPTIS 304
           +LE   E GKLRA+ VS F       L  S+  I+P ++
Sbjct: 123 ALEKGVEEGKLRAIGVSNFGPHHIQELLDSHPKIIPCVN 161


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 854 TKRSVS*SDRNSAIQTHTNVV*FGSLNCAFTCL 756
           TK  +  SD   ++++  NVV FG+LN   +CL
Sbjct: 778 TKLDLRLSDVTDSVRSRINVVKFGNLNSLLSCL 810


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 646 LKSKVAPFINQIASLFGLADFNSDMFSNKMDEMLSVIRQVNAQFKD 783
           LK+KV PFIN++     L        S K+ E +  +  + A+ +D
Sbjct: 458 LKNKVRPFINEVRRSITLEFHEEQNKSLKLQEHVDTVNDLIAELQD 503


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = +1

Query: 433 SEAMRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRLLSFPQ 612
           ++A+     +   ++ +   +D    Y ++  L+    F   V+D +  GH+  L SFP 
Sbjct: 641 TDALYSGSSICYSLIFSHSLLDLTFQYVDIASLLS--QFLLCVYDPSNVGHSFALASFPY 698

Query: 613 V 615
           V
Sbjct: 699 V 699


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +2

Query: 296 TISLMHSTRNFLKYQQRLKGLTTYSLWRLIRML 394
           T+ L ++  +F++YQ  +K   T  +W+LI++L
Sbjct: 2   TVILQYAD-HFVEYQNDMKRYDTLHVWKLIKLL 33


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +3

Query: 747 ISYQTSECTVQRPESNY 797
           ++YQ SECT+ + E+N+
Sbjct: 410 LAYQVSECTITKEETNW 426


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 21/69 (30%), Positives = 30/69 (43%)
 Frame = +2

Query: 242 FSCRKFANLC*SYQLILPTISLMHSTRNFLKYQQRLKGLTTYSLWRLIRMLD*QSCLKNI 421
           F C KF NL     LI  T S+  +   FL Y +       +    L ++L  QSC+  +
Sbjct: 168 FGCIKFGNLNLDKALICSTCSISAALLLFLLYVRLPFWTLKHMFSGLFQVLGVQSCVVIV 227

Query: 422 LKENLRL*D 448
            K  + L D
Sbjct: 228 TKGLMYLFD 236


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
 Frame = +1

Query: 559 VFDTAPTGHTLRLLSFPQVVERGLGKLMRL---KSKVAPFINQIASLFGLADFNSDMFSN 729
           V+D+    + + L +F +  +   G++ +     +K   F  ++  +     F+SD+FSN
Sbjct: 435 VYDSISLKYVMDLATFEEPYDFNPGQIEKFIMNGNKKGAFSIRLNHIENSISFSSDLFSN 494

Query: 730 KMDEMLSVIRQVNAQFKDPNQTTFVCVCIAEFLSLYETE 846
            +    SV  Q        +Q T +   ++  L  ++T+
Sbjct: 495 PIKSSDSVSLQSTPSELITSQLTRIAKSLSSVLMRFDTD 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,104,766
Number of Sequences: 5004
Number of extensions: 76915
Number of successful extensions: 197
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 697499478
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)