Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_B09
(1281 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_05_0014 - 20071514-20071690,20071779-20071894,20072177-200723... 281 6e-76
02_05_0729 - 31271566-31271730,31271799-31271933,31272210-312722... 97 2e-20
09_05_0004 + 20021394-20023430 31 1.5
02_05_0571 - 30072521-30072595,30072681-30072749,30072826-300729... 31 2.0
05_01_0503 - 4196989-4197425,4197507-4199436,4200910-4201017 29 6.0
04_01_0616 - 8069107-8069217,8070127-8070499,8070514-8070751,807... 29 6.0
06_02_0051 - 10957857-10958127,10959791-10960035,10960160-109602... 29 7.9
05_05_0084 - 22262007-22262300,22262435-22262707,22263418-222634... 29 7.9
02_05_0546 + 29889861-29890182,29891057-29892798 29 7.9
02_03_0082 - 15021751-15022330,15022397-15022626 29 7.9
>09_05_0014 -
20071514-20071690,20071779-20071894,20072177-20072315,
20072649-20072672,20072879-20072989,20073089-20073239,
20073357-20073478,20074287-20074556
Length = 369
Score = 281 bits (690), Expect = 6e-76
Identities = 145/284 (51%), Positives = 190/284 (66%), Gaps = 10/284 (3%)
Frame = +1
Query: 139 EPSLKNVIDQKSLRWIFXXXXXXXXXXXCSCSLAVQLSKVRESVLIISTDPAHNISDAFD 318
+P+++N+++Q+SL+W+F CS L++ L+ R+SVL+ISTDPAHN+SDAF
Sbjct: 12 DPTVRNLLEQESLKWVFVGGKGGVGKTTCSSILSILLASARQSVLVISTDPAHNLSDAFQ 71
Query: 319 QKFSKVPTKVKGFDNLFAMEIDPNVGLTELPEEYFEGESEAMRLDKGVMQEIVGAFPGID 498
Q+F+K PT V+GF+NL+AMEIDP V + E EG + E+ A PG+D
Sbjct: 72 QRFTKFPTLVRGFNNLYAMEIDPKVENDDFANEGMEG----------FLSELTNAIPGVD 121
Query: 499 EAMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRLLSFPQVVERGLGKLMRLKSKVAPFINQ 678
EAMS+AE++KLV+ M++S VVFDTAPTGHTLRLL FP +E+GL K+M LK+K +NQ
Sbjct: 122 EAMSFAEMLKLVQTMDYSVVVFDTAPTGHTLRLLQFPATLEKGLEKMMALKNKFGGLLNQ 181
Query: 679 IASLFGLAD-FNSDMFSNKMDEMLSVIRQVNAQFKDP--------NQTTFVCVCIAEFLS 831
LFGL D N D +++ M VI QVN QFKDP + TTFVCVCI EFLS
Sbjct: 182 ATRLFGLGDELNEDAMLGRLEGMKDVIEQVNRQFKDPIWSNLLEKDLTTFVCVCIPEFLS 241
Query: 832 LYETERLVQELTRCGIDTHNIIVNQLLLRSSA-PGELCAARHKV 960
LYETERLVQEL + ID HNII+NQ+L A +L AR K+
Sbjct: 242 LYETERLVQELAKFEIDAHNIIINQVLFDEEAVESKLLKARIKM 285
>02_05_0729 -
31271566-31271730,31271799-31271933,31272210-31272284,
31273003-31273068,31273154-31273222,31273303-31273377,
31273518-31273628,31273947-31274009,31274064-31274453
Length = 382
Score = 97.5 bits (232), Expect = 2e-20
Identities = 64/191 (33%), Positives = 103/191 (53%), Gaps = 33/191 (17%)
Frame = +1
Query: 223 CSCSLAVQLSKVRESVLIISTDPAHNISDAFDQKFSKVPTKVKGFDN------------- 363
C+ SLAV+ + L++STDPAH++SD+F Q S V + F++
Sbjct: 85 CAASLAVRFANNGHPTLVVSTDPAHSLSDSFAQVASPVEHLLSRFEDLSGGALVPVEGPE 144
Query: 364 --LFAMEIDPNVGLTELPEEYFEGESEAMR-----LDKGVMQEIVGAF----------PG 492
LFA+EI+P E + ++ + GV+ E +G PG
Sbjct: 145 APLFALEINPEKAREEFRAASQKNGGTGVKDFMDGMGLGVLAEQLGELKLGELLDTPPPG 204
Query: 493 IDEAMSYAEVMKLVKGMNFS---AVVFDTAPTGHTLRLLSFPQVVERGLGKLMRLKSKVA 663
+DEA++ ++VM+ ++ +S +VFDTAPTGHTLRLLS P ++ +GK+++L+SK+A
Sbjct: 205 LDEAIAISKVMQFLEAQEYSMFRRIVFDTAPTGHTLRLLSLPDFLDASIGKILKLRSKIA 264
Query: 664 PFINQIASLFG 696
+ I S+FG
Sbjct: 265 SATSAIKSVFG 275
>09_05_0004 + 20021394-20023430
Length = 678
Score = 31.5 bits (68), Expect = 1.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 546 VHAFY*FHHLSIAHSLINTRKSSNNLLHDTLVQSHS 439
+HAF H+ +AH L + S +N+ +TL+ HS
Sbjct: 197 LHAFVVSGHMELAHELFDEMPSKSNVAWNTLLMGHS 232
>02_05_0571 -
30072521-30072595,30072681-30072749,30072826-30072900,
30072981-30073050,30073168-30073279,30073576-30073674,
30073847-30073939,30074994-30075062,30076845-30076911
Length = 242
Score = 31.1 bits (67), Expect = 2.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 226 SCSLAVQLSKVRESVLIISTDPAHNISDAFDQKFSKV 336
+C +A L ++ E + I+S DP I ++FD+ F V
Sbjct: 120 NCEVAELLQEIHEHMAILSEDPKIKIPESFDKAFQYV 156
>05_01_0503 - 4196989-4197425,4197507-4199436,4200910-4201017
Length = 824
Score = 29.5 bits (63), Expect = 6.0
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +1
Query: 406 LPEEYFEGESEAMRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVKGMNFSAVV 561
+ +YF G S + + GV E VGA I + +S V K+ G F+ V
Sbjct: 531 IENQYFLGSSYCWKPNDGVKPEDVGALHLIPKELSMKVVSKIEAGERFTVYV 582
>04_01_0616 -
8069107-8069217,8070127-8070499,8070514-8070751,
8070881-8071189,8071225-8071363
Length = 389
Score = 29.5 bits (63), Expect = 6.0
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +3
Query: 630 RQADAFEVKGCPL---HQSNCVTVWTSRFQLGHVQQQNG*DV 746
RQA+ EV+ C L + C VW + GHV +G D+
Sbjct: 331 RQAEMLEVRSCSLDLKQRHPCQQVWKFDLEKGHVNVVSGADI 372
>06_02_0051 -
10957857-10958127,10959791-10960035,10960160-10960229,
10960319-10960986
Length = 417
Score = 29.1 bits (62), Expect = 7.9
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 229 CSLAVQLSKVRESVLIISTDPA--HNISDAFDQKFSKVPTKVKGFDNLFAMEIDPNVGLT 402
C++A++L++ +++++ DPA IS + +V TK FD A D + L
Sbjct: 72 CAMALELARRGLNLVLVGRDPARLREISGTIRSRHGRVQTKAVVFDLSLASTPDGDQPLR 131
Query: 403 ELPE 414
L E
Sbjct: 132 RLRE 135
>05_05_0084 -
22262007-22262300,22262435-22262707,22263418-22263468,
22263944-22264035,22264715-22264724
Length = 239
Score = 29.1 bits (62), Expect = 7.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 188 SLEGKAELGKLRAVAVSQFSCRKFANL 268
++E + GK RA+ VS FSC+K +L
Sbjct: 80 AMEKLYDSGKARAIGVSNFSCKKLEDL 106
>02_05_0546 + 29889861-29890182,29891057-29892798
Length = 687
Score = 29.1 bits (62), Expect = 7.9
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 578 VGAVSNTTALKFMPFTSFITSA*LIASSIPGKAPTISCMTP 456
VG N A+ +P T+ +TSA L+ PG +P S P
Sbjct: 38 VGVPRNLPAVAALPATAPVTSASLVTLKPPGSSPVKSVNNP 78
>02_03_0082 - 15021751-15022330,15022397-15022626
Length = 269
Score = 29.1 bits (62), Expect = 7.9
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 412 EEYFEGESEAMRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVKGM 543
+E E E A +LDK + +PG DE ++ +++KLVK +
Sbjct: 49 KEDCESEKGAHKLDKMLEDHRTSLYPGCDE-KAFGDLLKLVKNI 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,910,104
Number of Sequences: 37544
Number of extensions: 461593
Number of successful extensions: 1058
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3980760984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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