Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_B06
         (1226 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    30   0.75 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.00 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   3.0  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    26   9.3  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    26   9.3  

>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 29.9 bits (64), Expect = 0.75
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 457 FLHVGYVPQLLVWPNVHGASASTQTSLLRXP 365
           F   GY+P ++ WPN    SA+T + + R P
Sbjct: 117 FQQQGYIP-VITWPNTDSPSATTSSPISRNP 146


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 1.00
 Identities = 17/65 (26%), Positives = 26/65 (40%)
 Frame = +1

Query: 541  ISTRPLTTNPRFRPATEFLLAVTHHMTARPHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQ 720
            I + P +  P+  P +  L        A P   VPP      + PP+ +  A+ PP+ V 
Sbjct: 978  ILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVP 1037

Query: 721  QAEDP 735
                P
Sbjct: 1038 STAPP 1042


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +1

Query: 658  HQVEDPPMEVQQAEDPPMEVQQAEDPPMEV 747
            H V  PP+  Q A  P M       PPM V
Sbjct: 1685 HPVSTPPVRPQSAAPPQMSAPTPPPPPMSV 1714


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +1

Query: 628 PHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPME 744
           P    PP        PPM+ QQ   PP   QQA  PP++
Sbjct: 211 PQQNYPPAASSSA--PPMQYQQTAYPP---QQAPYPPVQ 244


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 462 SLVEGSHAAEPTQPKPMAPKPQTPT 536
           S +  + AA P +P  ++P+P +PT
Sbjct: 475 SSINSNRAASPFRPTSVSPQPSSPT 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,294
Number of Sequences: 5004
Number of extensions: 51729
Number of successful extensions: 155
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 665388788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)