Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_B06
(1226 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0195 + 23142830-23143714,23144288-23144314,23144657-231448... 36 0.065
03_01_0019 + 167900-168343,168567-168751,169076-169430 33 0.61
10_08_1037 - 22477358-22478752 31 2.4
10_01_0075 - 979335-979954,980136-980405,980949-980989,981563-98... 30 4.3
11_06_0610 - 25449085-25453284 29 5.7
02_04_0233 - 21135743-21135867,21135970-21136340,21136486-211367... 29 5.7
10_07_0020 - 11944054-11944653,11944734-11944847,11944917-119449... 29 9.9
09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616 29 9.9
08_01_0260 + 2127396-2127962 29 9.9
04_04_0430 - 25153572-25154060 29 9.9
03_02_0341 - 7643426-7643973,7644340-7644505 29 9.9
02_01_0279 - 1860410-1860508,1861536-1861889,1862660-1862805,186... 29 9.9
01_06_0482 - 29672720-29673854,29673941-29676267 29 9.9
>05_05_0195 + 23142830-23143714,23144288-23144314,23144657-23144866,
23144976-23145242,23146290-23146376,23146495-23146553,
23147166-23147768,23148063-23148192,23148570-23149100,
23149636-23149743,23149911-23150456,23150957-23151079,
23151494-23151709
Length = 1263
Score = 35.9 bits (79), Expect = 0.065
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +1
Query: 643 PPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPMEV 747
PP E Q+ PP E Q PP E Q ED EV
Sbjct: 1217 PPAETSQLATPPAETSQLATPPAETSQLEDGRTEV 1251
Score = 33.1 bits (72), Expect = 0.46
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 634 MEVPPTEVHQVEDPPMEVQQAEDPPMEVQQAED 732
+ PP E Q+ PP E Q ED EVQ +D
Sbjct: 1224 LATPPAETSQLATPPAETSQLEDGRTEVQNLDD 1256
Score = 31.9 bits (69), Expect = 1.1
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +1
Query: 637 EVPPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPMEVA 750
EVPP E PP E Q PP E Q PP E +
Sbjct: 1208 EVPPVEATA---PPAETSQLATPPAETSQLATPPAETS 1242
>03_01_0019 + 167900-168343,168567-168751,169076-169430
Length = 327
Score = 32.7 bits (71), Expect = 0.61
Identities = 24/86 (27%), Positives = 36/86 (41%)
Frame = +3
Query: 348 RTCXXIGCLNSEVCVLAEAPCTFGHTSNCGTYPTCKKKSLVEGSHAAEPTQPKPMAPKPQ 527
R+ +G + +C+LA C+ H T + S+++ P+ P P+AP P
Sbjct: 8 RSFWSVGVAAALLCLLAAHGCSAKHHKPKPTPGGISGNASSSSSNSSTPSIPPPVAPTPT 67
Query: 528 TPTLDFDSXXXXXXXXXXSNGVSFGG 605
PT S SNG S GG
Sbjct: 68 APTPPIPS-----PGTGSSNGSSGGG 88
>10_08_1037 - 22477358-22478752
Length = 464
Score = 30.7 bits (66), Expect = 2.4
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 628 PHMEVPPTEVHQVEDPP-MEVQQAEDPPMEVQQAEDPPM 741
PH +PP HQ PP M +Q+ PP+ A PP+
Sbjct: 251 PHRPLPPQ--HQQPKPPSMRLQKIRPPPISTPVARPPPV 287
>10_01_0075 -
979335-979954,980136-980405,980949-980989,981563-981663
Length = 343
Score = 29.9 bits (64), Expect = 4.3
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Frame = +1
Query: 580 PATEFLLAVTHHMTARPHMEVPPTEVHQVED---PPM---EVQQAEDPPMEVQQAEDP 735
PAT L + H +P ++ PP+ H E+ PP+ V PP + QQ P
Sbjct: 144 PATHTLRMLQHQPEPQPQLQHPPSPPHPKEECISPPLMEENVPVKPPPPKKRQQGRQP 201
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.5 bits (63), Expect = 5.7
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Frame = +1
Query: 568 PRFRPATEFLLAVTHHMTARPHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQQA-EDPP 738
P+ P TE+ T + P + PPT PP+ PP A E PP
Sbjct: 531 PQAEPPTEYSPPATPESSPPPEGKSPPTPTASHSPPPVPEGHTPSPPKSGPPAGESPP 588
>02_04_0233 -
21135743-21135867,21135970-21136340,21136486-21136757,
21137289-21137397,21137846-21138247,21138376-21138419,
21138539-21138759,21140163-21140274,21140620-21140754
Length = 596
Score = 29.5 bits (63), Expect = 5.7
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 439 HILHARRSPLSKDRMQQNRRNLSQWLQNRKHQLLISTR 552
HIL R + ++ D + + + LS+WLQ++ LIS++
Sbjct: 308 HILPCRPTGVTLDIKKSSHKKLSKWLQSKSSAGLISSK 345
>10_07_0020 -
11944054-11944653,11944734-11944847,11944917-11944976,
11945154-11945474,11945556-11945594
Length = 377
Score = 28.7 bits (61), Expect = 9.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 453 KKKSLVEGSHAAEPTQPKPMAPKPQTP 533
KKK+ V+ AA P +P P P P +P
Sbjct: 121 KKKTAVKKKSAAAPPKPAPPPPPPPSP 147
>09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616
Length = 695
Score = 28.7 bits (61), Expect = 9.9
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 619 TARPHMEVPPTEVHQVEDPPMEVQQAEDPP--MEVQQAEDPPMEVAIHMEAINIQVD 783
TA PH V ++H+ E P E + P E + +DP ++ A H E I++++D
Sbjct: 596 TALPHPSVA-IKMHK-EKPSEENMSKPNSPNTTEEMKKQDPSLDSATHTEKISLELD 650
>08_01_0260 + 2127396-2127962
Length = 188
Score = 28.7 bits (61), Expect = 9.9
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 468 VEGSHAAEPTQPKPMAPKPQTPTL 539
VE + + PT P P+AP P+TPT+
Sbjct: 121 VEAATGSNPT-PSPLAPLPRTPTV 143
>04_04_0430 - 25153572-25154060
Length = 162
Score = 28.7 bits (61), Expect = 9.9
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +3
Query: 444 PTCKKKSLVEGSHAAEPTQPKPMAPKPQTPTLDFD 548
P KK E AA P P P P+P TP FD
Sbjct: 115 PEADKKK--EQEAAAAPPSPPPPPPRPATPPPSFD 147
>03_02_0341 - 7643426-7643973,7644340-7644505
Length = 237
Score = 28.7 bits (61), Expect = 9.9
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +1
Query: 610 HHMTARPHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPMEVAIH 756
HH+ P + VPP H PP+ +PP+ V + P+ V H
Sbjct: 165 HHIVLHPPVIVPPKHDHDHSLPPV-----HEPPVTVPDHKPAPVTVPDH 208
>02_01_0279 -
1860410-1860508,1861536-1861889,1862660-1862805,
1862885-1862925,1863010-1863173,1863217-1863281,
1863410-1863670,1863754-1863817,1863946-1864006,
1864112-1864473
Length = 538
Score = 28.7 bits (61), Expect = 9.9
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 459 KSLVEGSHAAEPTQPKPMAP-KPQTPTLDFD 548
+ L+EGS +PT P P+ P +PQ +D D
Sbjct: 74 EELLEGSCDPDPTPPPPLPPLQPQATPMDAD 104
>01_06_0482 - 29672720-29673854,29673941-29676267
Length = 1153
Score = 28.7 bits (61), Expect = 9.9
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 670 DPPMEVQQAEDPPMEVQQAEDPPMEVAIHMEAINIQVDRQEG 795
D ++V++ E P +E ++ E P + +E IN+ + + EG
Sbjct: 315 DAGLDVRKEEVPTVESEENESPQSKHCTSVEVINVDLAQPEG 356
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,093,314
Number of Sequences: 37544
Number of extensions: 451097
Number of successful extensions: 1554
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1525
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3771247248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -