Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_B04
         (1421 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X70944-1|CAA50283.1|  707|Homo sapiens PTB-associated splicing f...    31   7.7  
BC027708-1|AAH27708.1|  525|Homo sapiens SFPQ protein protein.         31   7.7  
BC004534-1|AAH04534.2|  634|Homo sapiens SFPQ protein protein.         31   7.7  
AL590434-2|CAI12467.1|  707|Homo sapiens splicing factor proline...    31   7.7  

>X70944-1|CAA50283.1|  707|Homo sapiens PTB-associated splicing factor
            protein.
          Length = 707

 Score = 31.5 bits (68), Expect = 7.7
 Identities = 43/183 (23%), Positives = 49/183 (26%), Gaps = 6/183 (3%)
 Frame = -1

Query: 1139 PXXXPXXGGPXXXAXXXPAP---QXKPPXXKPXRXAXXXAGQXRXPGPVTAXPRXXXAEA 969
            P   P    P       P P   Q  PP  +         G    PG  +A P    A  
Sbjct: 74   PQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPP 133

Query: 968  XXX---GAXXGXRXXGXXPTXXXAGXXXXPGAXPPXTXRTGXXGAPXXXXXXXRXPPXXX 798
                  GA  G    G  PT   A     PGA PP    +G    P         PP   
Sbjct: 134  ATPPTSGAPPGS-GPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGP--PPPPAA 190

Query: 797  XRRAGPGAXXXGXEXEPRXGRGARXXSMGXXAGAXXVRLTXXGSXRPXQXGQTRXGGAXX 618
                GPG         P+ G+       G   G      T  G  +P   G     G   
Sbjct: 191  VPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLS----TPGGHPKPPHRGGGEPRGGRQ 246

Query: 617  XEP 609
              P
Sbjct: 247  HHP 249


>BC027708-1|AAH27708.1|  525|Homo sapiens SFPQ protein protein.
          Length = 525

 Score = 31.5 bits (68), Expect = 7.7
 Identities = 43/183 (23%), Positives = 49/183 (26%), Gaps = 6/183 (3%)
 Frame = -1

Query: 1139 PXXXPXXGGPXXXAXXXPAP---QXKPPXXKPXRXAXXXAGQXRXPGPVTAXPRXXXAEA 969
            P   P    P       P P   Q  PP  +         G    PG  +A P    A  
Sbjct: 74   PQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPP 133

Query: 968  XXX---GAXXGXRXXGXXPTXXXAGXXXXPGAXPPXTXRTGXXGAPXXXXXXXRXPPXXX 798
                  GA  G    G  PT   A     PGA PP    +G    P         PP   
Sbjct: 134  ATPPTSGAPPGS-GPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGP--PPPPAA 190

Query: 797  XRRAGPGAXXXGXEXEPRXGRGARXXSMGXXAGAXXVRLTXXGSXRPXQXGQTRXGGAXX 618
                GPG         P+ G+       G   G      T  G  +P   G     G   
Sbjct: 191  VPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLS----TPGGHPKPPHRGGGEPRGGRQ 246

Query: 617  XEP 609
              P
Sbjct: 247  HHP 249


>BC004534-1|AAH04534.2|  634|Homo sapiens SFPQ protein protein.
          Length = 634

 Score = 31.5 bits (68), Expect = 7.7
 Identities = 43/183 (23%), Positives = 49/183 (26%), Gaps = 6/183 (3%)
 Frame = -1

Query: 1139 PXXXPXXGGPXXXAXXXPAP---QXKPPXXKPXRXAXXXAGQXRXPGPVTAXPRXXXAEA 969
            P   P    P       P P   Q  PP  +         G    PG  +A P    A  
Sbjct: 1    PQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPP 60

Query: 968  XXX---GAXXGXRXXGXXPTXXXAGXXXXPGAXPPXTXRTGXXGAPXXXXXXXRXPPXXX 798
                  GA  G    G  PT   A     PGA PP    +G    P         PP   
Sbjct: 61   ATPPTSGAPPGS-GPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGP--PPPPAA 117

Query: 797  XRRAGPGAXXXGXEXEPRXGRGARXXSMGXXAGAXXVRLTXXGSXRPXQXGQTRXGGAXX 618
                GPG         P+ G+       G   G      T  G  +P   G     G   
Sbjct: 118  VPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLS----TPGGHPKPPHRGGGEPRGGRQ 173

Query: 617  XEP 609
              P
Sbjct: 174  HHP 176


>AL590434-2|CAI12467.1|  707|Homo sapiens splicing factor
            proline/glutamine-rich (polypyrimidine tract binding
            protein as protein.
          Length = 707

 Score = 31.5 bits (68), Expect = 7.7
 Identities = 43/183 (23%), Positives = 49/183 (26%), Gaps = 6/183 (3%)
 Frame = -1

Query: 1139 PXXXPXXGGPXXXAXXXPAP---QXKPPXXKPXRXAXXXAGQXRXPGPVTAXPRXXXAEA 969
            P   P    P       P P   Q  PP  +         G    PG  +A P    A  
Sbjct: 74   PQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPP 133

Query: 968  XXX---GAXXGXRXXGXXPTXXXAGXXXXPGAXPPXTXRTGXXGAPXXXXXXXRXPPXXX 798
                  GA  G    G  PT   A     PGA PP    +G    P         PP   
Sbjct: 134  ATPPTSGAPPGS-GPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGP--PPPPAA 190

Query: 797  XRRAGPGAXXXGXEXEPRXGRGARXXSMGXXAGAXXVRLTXXGSXRPXQXGQTRXGGAXX 618
                GPG         P+ G+       G   G      T  G  +P   G     G   
Sbjct: 191  VPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLS----TPGGHPKPPHRGGGEPRGGRQ 246

Query: 617  XEP 609
              P
Sbjct: 247  HHP 249


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,866,791
Number of Sequences: 237096
Number of extensions: 1854180
Number of successful extensions: 3125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2996
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 20827470920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)