Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_B04
(1421 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 2.0
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 2.0
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 2.0
U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astaci... 30 4.6
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 6.1
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 29 6.1
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.1 bits (67), Expect = 2.0
Identities = 26/101 (25%), Positives = 29/101 (28%), Gaps = 3/101 (2%)
Frame = -2
Query: 1171 RXEXPXPXXXPPXXXXPXGAPXX-TPGXRRPPXGNXPXESXXGQXXXXXDKX--GXRXX* 1001
R E P PP P G+P P PP G+ P Q + G
Sbjct: 401 REEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTGLPSRQKRQAPEDRPTGSPPTG 460
Query: 1000 XXPPGXPPRRXPXXGPXXGXEXXXXXPRXXPPGAXAXRGXP 878
P G P R P PR PP G P
Sbjct: 461 SPPTGRPHRGGPGKSESSESREGPRGPRRSPPTGSPPTGSP 501
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.1 bits (67), Expect = 2.0
Identities = 26/101 (25%), Positives = 29/101 (28%), Gaps = 3/101 (2%)
Frame = -2
Query: 1171 RXEXPXPXXXPPXXXXPXGAPXX-TPGXRRPPXGNXPXESXXGQXXXXXDKX--GXRXX* 1001
R E P PP P G+P P PP G+ P Q + G
Sbjct: 422 REEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTGLPSRQKRQAPEDRPTGSPPTG 481
Query: 1000 XXPPGXPPRRXPXXGPXXGXEXXXXXPRXXPPGAXAXRGXP 878
P G P R P PR PP G P
Sbjct: 482 SPPTGRPHRGGPGKSESSESREGPRGPRRSPPTGSPPTGSP 522
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.1 bits (67), Expect = 2.0
Identities = 26/101 (25%), Positives = 29/101 (28%), Gaps = 3/101 (2%)
Frame = -2
Query: 1171 RXEXPXPXXXPPXXXXPXGAPXX-TPGXRRPPXGNXPXESXXGQXXXXXDKX--GXRXX* 1001
R E P PP P G+P P PP G+ P Q + G
Sbjct: 407 REEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTGLPSRQKRQAPEDRPTGSPPTG 466
Query: 1000 XXPPGXPPRRXPXXGPXXGXEXXXXXPRXXPPGAXAXRGXP 878
P G P R P PR PP G P
Sbjct: 467 SPPTGRPHRGGPGKSESSESREGPRGPRRSPPTGSPPTGSP 507
>U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astacin
protease protein33 protein.
Length = 644
Score = 29.9 bits (64), Expect = 4.6
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -2
Query: 1189 PXRPXXRXEXPXPXXXPPXXXXPXGAPXXTPGXRRPPXGNXP 1064
P P R P P PP P P RRPP G P
Sbjct: 40 PPPPWHRNRGPPPFGPPPPWDRPPPPWRRPPWHRRPPWGLPP 81
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 29.5 bits (63), Expect = 6.1
Identities = 25/93 (26%), Positives = 26/93 (27%), Gaps = 1/93 (1%)
Frame = -2
Query: 1153 PXXXPPXXXXPXGAPXXTPGXRRPPXGNXPXESXXGQXXXXXDKXGXRXX*XXP-PGXPP 977
P PP P GAP P P N G D G P P P
Sbjct: 177 PSGGPPGPFGPSGAP---PSGGPPGPFNPSEAPPSGGPTGPFDPSGAPPSGGPPGPFNPS 233
Query: 976 RRXPXXGPXXGXEXXXXXPRXXPPGAXAXRGXP 878
P GP + P PPG G P
Sbjct: 234 GAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAP 266
Score = 29.5 bits (63), Expect = 6.1
Identities = 25/93 (26%), Positives = 26/93 (27%), Gaps = 1/93 (1%)
Frame = -2
Query: 1153 PXXXPPXXXXPXGAPXXTPGXRRPPXGNXPXESXXGQXXXXXDKXGXRXX*XXP-PGXPP 977
P PP P GAP P P N G D G P P P
Sbjct: 237 PSGGPPGPFDPSGAP---PSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPS 293
Query: 976 RRXPXXGPXXGXEXXXXXPRXXPPGAXAXRGXP 878
P GP + P PPG G P
Sbjct: 294 GAPPSGGPPGPFDPSGAQPSGGPPGPFNPSGAP 326
Score = 29.5 bits (63), Expect = 6.1
Identities = 25/93 (26%), Positives = 26/93 (27%), Gaps = 1/93 (1%)
Frame = -2
Query: 1153 PXXXPPXXXXPXGAPXXTPGXRRPPXGNXPXESXXGQXXXXXDKXGXRXX*XXP-PGXPP 977
P PP P GAP P P N G D G P P P
Sbjct: 327 PSGGPPGPFDPSGAP---PSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPS 383
Query: 976 RRXPXXGPXXGXEXXXXXPRXXPPGAXAXRGXP 878
P GP + P PPG G P
Sbjct: 384 GAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAP 416
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical protein
C50F7.5 protein.
Length = 309
Score = 29.5 bits (63), Expect = 6.1
Identities = 33/142 (23%), Positives = 37/142 (26%), Gaps = 2/142 (1%)
Frame = -2
Query: 1276 PEPGXXXXXDXPKXXXXAXXGHXXXNXXPPXRPXXRXEXPXPXXXPPXXXXPXGAPXXTP 1097
P PG + P+ H P P E P P P P G P +P
Sbjct: 122 PSPGPVDPSEDPQPSVEPSEDHQPSGPPSPG-PVDPSEDPQPSVEPSEDPQPSGPP--SP 178
Query: 1096 GXRRPPXGNXPXESXXGQXXXXXDKXGXRXX*XXPPGXPPR-RXPXXGPXXGXEXXXXXP 920
G P P S D+ P P P P G P
Sbjct: 179 GPVDPSEDPQPSGSSSPGPVDPSDEPSPSGPPSPGPVDPSEDPKPSEPPSPGPVDPSDEP 238
Query: 919 R-XXPPGAXAXRGXPHXXRXGP 857
PPG G P GP
Sbjct: 239 SPSDPPGPPGPPGPPTRRPPGP 260
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,885,243
Number of Sequences: 27780
Number of extensions: 216675
Number of successful extensions: 380
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4048197742
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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