Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_B01
         (1258 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    32   0.14 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   1.0  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    28   3.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   6.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   9.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   9.5  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 32.3 bits (70), Expect = 0.14
 Identities = 26/71 (36%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
 Frame = +1

Query: 682 PGPGG-GGXGFXXXKXPPXPXEXGXGFWXPXPF---PPXXXXGPXXSGGGXG-FXXPXGG 846
           PGPGG GG G    +        G G   P  F   P     GP   GGG G F    GG
Sbjct: 202 PGPGGFGGFGGFGGEGHHHGGHGGFG-GGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGG 260

Query: 847 XSGFPXNRGXP 879
             G P   G P
Sbjct: 261 FGGGPGGHGGP 271



 Score = 29.5 bits (63), Expect = 1.0
 Identities = 29/91 (31%), Positives = 30/91 (32%)
 Frame = -3

Query: 998 GGXFFXXXXGGGGPLGKXPXXXPFXGFGPFXGLXXXXFFRGXPRFXGKPEXPPXGX*KPX 819
           GG F     G GGP    P    F GFG F G        G   F G P     G  +  
Sbjct: 187 GGGFGGFGGGSGGP---PPGPGGFGGFGGFGG--EGHHHGGHGGFGGGP-----GGFEGG 236

Query: 818 PPPEXXGPXXXXGGNGXGXQXPXPXSXGXGG 726
           P     GP    GG G     P     G GG
Sbjct: 237 PGGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect(2) = 1.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 709 NPPPPPPXP 683
           NPPPPPP P
Sbjct: 8   NPPPPPPPP 16



 Score = 21.8 bits (44), Expect(2) = 1.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 706 PPPPPPXPXKXKE 668
           PPPPPP   K ++
Sbjct: 25  PPPPPPGYVKKRK 37


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
            Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/42 (30%), Positives = 15/42 (35%)
 Frame = +2

Query: 1037 NPGVSPXXTPXGPPXXPTPAXXXKXXPXXPXXEXGXXPXTPP 1162
            +P + P  TP   P  P P    K  P  P       P  PP
Sbjct: 720  SPAIKPQVTPA--PPTPAPTPAVKHHPPPPPVRSSISPSMPP 759


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.4 bits (48), Expect(2) = 6.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 706 PPPPPPXP 683
           PPPPPP P
Sbjct: 761 PPPPPPPP 768



 Score = 21.4 bits (43), Expect(2) = 6.4
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -1

Query: 709 NPPPPPP 689
           +PPPPPP
Sbjct: 731 SPPPPPP 737


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 19/66 (28%), Positives = 20/66 (30%), Gaps = 4/66 (6%)
 Frame = +2

Query: 941  GGFXPKXP--PPXXXXQKXXPPIXXGXXPXXX*KN--PGVSPXXTPXGPPXXPTPAXXXK 1108
            GG  P  P   P    Q   PP      P     +  P  S    P GPP  P P     
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPAS 1738

Query: 1109 XXPXXP 1126
              P  P
Sbjct: 1739 SAPSVP 1744


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 19/92 (20%), Positives = 22/92 (23%), Gaps = 1/92 (1%)
 Frame = +2

Query: 965  PPXXXXQKXXPPIXX-GXXPXXX*KNPGVSPXXTPXGPPXXPTPAXXXKXXPXXPXXEXG 1141
            PP        PP+      P     +    P   P G P  P P+      P        
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPV 1161

Query: 1142 XXPXTPPXXXPXXGXGXXPXXGGGXXXPPXXP 1237
              P       P    G  P        PP  P
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP 1193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.157    0.564 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,248
Number of Sequences: 5004
Number of extensions: 27548
Number of successful extensions: 98
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 681602054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)