Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_B01
         (1258 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            29   0.28 
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    25   6.1  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    24   8.1  

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 29.1 bits (62), Expect = 0.28
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -1

Query: 1213 PPPXXGGXPXPXXGXPPXGGXXXXPPFP 1130
            PPP  G  P P  G P  G     PP P
Sbjct: 587  PPPPMGPPPSPLAGGPLGGPAGSRPPLP 614



 Score = 26.6 bits (56), Expect = 1.5
 Identities = 17/53 (32%), Positives = 18/53 (33%)
 Frame = -3

Query: 884 FRGXPRFXGKPEXPPXGX*KPXPPPEXXGPXXXXGGNGXGXQXPXPXSXGXGG 726
           F   P     P  PP     P P P   GP     G   G + P P   G GG
Sbjct: 573 FPNLPNAQPPPAPPPPPPMGPPPSPLAGGPL----GGPAGSRPPLPNLLGFGG 621



 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -1

Query: 754 QXPFPXGXXXFXXXXNPPPPPPXP 683
           Q  FP G         PP PPP P
Sbjct: 566 QLRFPAGFPNLPNAQPPPAPPPPP 589


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
            binding protein protein.
          Length = 838

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
 Frame = +2

Query: 1040 PG-VSPXXTPXGPPXXPTPAXXXKXXPXXPXXEXGXXPXTPPXXXPXXGXGXXP 1198
            PG V P  T  G P  P P       P  P       P  PP   P    G  P
Sbjct: 195  PGNVGPPRT--GTPTQPQPPRPGGMYPQPPGVPMPMRPQMPPGAVPGMQPGMQP 246


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 25/87 (28%), Positives = 27/87 (31%), Gaps = 5/87 (5%)
 Frame = -3

Query: 971 GGGGPLG-KXPXXXP-FXGFGPFXGLXXXXFFRGXPRFXGKPEXPPXGX*K---PXPPPE 807
           G  GP G K     P   G     G+      RG P   G    P     K   P  PP+
Sbjct: 654 GLNGPQGMKGDRGMPGLEGVAGLPGMVGEKGDRGLPGMSGLNGAPGEKGQKGETPQLPPQ 713

Query: 806 XXGPXXXXGGNGXGXQXPXPXSXGXGG 726
             GP    G NG       P   G  G
Sbjct: 714 RKGPPGPPGFNGPKGDKGLPGLAGPAG 740


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.317    0.157    0.564 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 686,713
Number of Sequences: 2352
Number of extensions: 10176
Number of successful extensions: 33
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 143878944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)