Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_A21
(1213 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 279 4e-76
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 105 9e-24
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 99 1e-21
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 95 2e-20
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 91 3e-19
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 83 6e-17
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 82 2e-16
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 70 8e-13
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 31 0.24
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 27 5.2
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 26 9.2
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 26 9.2
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 279 bits (685), Expect = 4e-76
Identities = 136/271 (50%), Positives = 191/271 (70%), Gaps = 1/271 (0%)
Frame = +3
Query: 162 LALHVPKAPGVPQXLKAGARMFSGLEXAVYRNINACKQFAQSVRSAYGPNGMNKMIINHI 341
+AL VPKA G PQ + G R+ G+E AV RN NA ++ ++ R++ GPNG NK+++NH+
Sbjct: 1 MALRVPKASG-PQLFREGYRIMQGVEDAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHL 59
Query: 342 DKQFVTSDAGTIIRELDVEHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXR 521
+ F+T+DA TIIREL+V HPAAKL+V A+Q Q+ E+GD NFV+V +G R
Sbjct: 60 QQTFLTNDAATIIRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIR 119
Query: 522 LGVTTSEIADGYERALDKCLEILPSLICNEIKDTKNIKEVTKGIVAAIMSKQYGHEQFIS 701
+G+T EIA GYE AL +E+L + ++I+ ++ KE+ K I I SKQYG+E F+S
Sbjct: 120 MGLTPLEIAKGYEMALSHTMEVLEEICADKIETVESEKELIKAIRTCISSKQYGNEDFLS 179
Query: 702 ELVTKACVAILP-EKTTFNVDNIRVCKILGAGLLQSEVLSGMVFRREVEGDVSSAKNAKI 878
+LV KA + +LP + + FNVDNIRV KI+G+ L S+V+ GMVF RE EG V+ +K AK+
Sbjct: 180 DLVAKAILTVLPKDPSKFNVDNIRVVKIMGSSLYNSQVVKGMVFPREPEGTVTRSKEAKV 239
Query: 879 AVYSCPIDIIQTETKGTXLIXSADELLNXSK 971
AV+SCP+DI QTETKGT L+ +A E+L+ SK
Sbjct: 240 AVFSCPLDISQTETKGTVLLHNAQEMLDFSK 270
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 105 bits (253), Expect = 9e-24
Identities = 73/251 (29%), Positives = 131/251 (52%), Gaps = 6/251 (2%)
Frame = +3
Query: 219 RMFSGLEXAVYRNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVTSDAGTIIRELDVE 398
R G++ AV +I A K A VR++ GP G++K++I+ + VT+D TI+ +++VE
Sbjct: 28 RRLHGID-AVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVE 86
Query: 399 HPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALD-- 572
H AKL+V S+ QD E+GDGT V+VL+G G+ IADGYE+A
Sbjct: 87 HQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVA 146
Query: 573 -KCLEILPSLICNEIKDTKNI-KEVTKGIVAAIMSKQYGHEQFISELVTKACVAILPEKT 746
K L+ + ++ ++T N+ + + + ++SK H+ F + V ++
Sbjct: 147 VKHLDAISDVVDFSPENTTNLFRSAKTSLGSKVVSK--AHDHFANIAVDAVLSVADLQRK 204
Query: 747 TFNVDNIRVCKILGAGLLQSEVLSGMVFRREVEGD--VSSAKNAKIAVYSCPIDIIQTET 920
+ + I+V +G + ++++ G+V +++ +NAKIA+ +CP + + +T
Sbjct: 205 DVDFELIKVDGKVGGSVDDTKLVKGVVVDKDMSHPQMPHRIENAKIAILTCPFEPPKPKT 264
Query: 921 KGTXLIXSADE 953
K I S E
Sbjct: 265 KHKLDITSVSE 275
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 98.7 bits (235), Expect = 1e-21
Identities = 58/194 (29%), Positives = 108/194 (55%), Gaps = 4/194 (2%)
Frame = +3
Query: 255 NINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVTSDAGTIIRELDVEHPAAKLMVLASQ 434
NI A + A ++R++ GP GM+KMI + +T+D TI++ L V HPAAK++V S
Sbjct: 24 NIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVLHPAAKMLVDLSA 83
Query: 435 MQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCLEIL-PSLICNE 611
QD E GDGT V++L+G + G+ + IA+ ++RA ++ + + + E
Sbjct: 84 AQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTVDCMKENALAIE 143
Query: 612 IKDTKN-IKEVTKGIVAAIMSKQYGHEQFISELVTKACVAILPEKTTFNVD--NIRVCKI 782
+ D ++ ++ T + + I+S QY + ++ + A + ++ + NVD +IR+ K
Sbjct: 144 LSDRESLLRAATTSLNSKIVS-QYSN--LLAPIAVDAVLKVIDPRVATNVDLKDIRIVKK 200
Query: 783 LGAGLLQSEVLSGM 824
LG + +E++ G+
Sbjct: 201 LGGIIDDTELIPGL 214
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 94.7 bits (225), Expect = 2e-20
Identities = 62/228 (27%), Positives = 118/228 (51%), Gaps = 3/228 (1%)
Frame = +3
Query: 162 LALHVPKAPGVPQXLKAGARMFSGLEXAVYRNINACKQFAQSVRSAYGPNGMNKMIINHI 341
++L P+ P + LK G G + NINAC ++R+ GP G +K++++
Sbjct: 1 MSLGGPQIPVI--VLKEGTDDSQG-RGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDR 57
Query: 342 DKQFVTSDAGTIIRELDVEHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXR 521
+ +++D TI++ LD+ HPAAK +V ++ QDAEVGDGT V+V +G
Sbjct: 58 GEVVISNDGATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVE 117
Query: 522 LGVTTSEIADGYERALDKCLEILPSLICN-EIKDTKNIKE-VTKGIVAAIMSKQY-GHEQ 692
GV++ I GY +A + + + + ++ D +++ +TK A+ SK +
Sbjct: 118 DGVSSHLIIRGYRKAAQLAVNKIKEIAIHLDLSDEGKLRDLLTKCASTAMNSKLIRSNST 177
Query: 693 FISELVTKACVAILPEKTTFNVDNIRVCKILGAGLLQSEVLSGMVFRR 836
F +++V A + + ++ N + I + K+ G + S ++ G+ F++
Sbjct: 178 FFTKMVVDAVLTL--DQEDLNENMIGIKKVPGGAMEDSLLVKGVAFKK 223
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 91.1 bits (216), Expect = 3e-19
Identities = 58/218 (26%), Positives = 108/218 (49%), Gaps = 7/218 (3%)
Frame = +3
Query: 252 RNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVTSDAGTIIRELDVEHPAAKLMVLAS 431
+N+ A A V+S+ GP G++KM+++ I VT+D TI+ LDVEHPA K++V +
Sbjct: 25 QNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEHPAGKVLVELA 84
Query: 432 QMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCLEILPSLICNE 611
Q QD EVGDGT V++++ + + + I GY A+ + ++ + ++
Sbjct: 85 QQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKFMTDVLSCS 144
Query: 612 IKDTKNIKEVTKGIVAAIMSKQYGHE-QFISELVTKACVAILPE----KTTFNVDNIRVC 776
+ D+ + + ++ SK G++ F S + A +++ +T + V + +
Sbjct: 145 V-DSLGKESLINVAKTSMSSKIIGNDSDFFSTMAVDAMLSVKTSNSKGETRYPVKAVNIL 203
Query: 777 KILGAGLLQSEVLSGMVFRREVEGDV--SSAKNAKIAV 884
K G +S ++ G + + +NAKIAV
Sbjct: 204 KAHGKSSRESVLVKGYALNCTIASQAMKTRVQNAKIAV 241
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 83.4 bits (197), Expect = 6e-17
Identities = 57/230 (24%), Positives = 108/230 (46%), Gaps = 7/230 (3%)
Frame = +3
Query: 255 NINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVTSDAGTIIRELDVEHPAAKLMVLASQ 434
NI A K A +R+ GP M KM+++ + +T+D I+RE++V HPAAK M+ ++
Sbjct: 24 NIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVAHPAAKSMIELAR 83
Query: 435 MQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCLEILPSL-ICNE 611
QD EVGDGT VI+L+G + + +++AL+ L I+ + +
Sbjct: 84 TQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDALSIIDEITLPVN 143
Query: 612 IKDTKNIKEVTKGIVAAIMSKQYGHEQFISELVTKACVAILPEKT-TFNVD---NIRVCK 779
+ D + + + + + ++ + L +A + +D RV K
Sbjct: 144 VDDNAEMFRLIRTCIGTKLVARW--SDLMCHLALRAVRTVASTSNGRMEIDIKRYARVEK 201
Query: 780 ILGAGLLQSEVLSGMVFRREVEGDVSSAK--NAKIAVYSCPIDIIQTETK 923
+ G + S VL G++ ++V + N +I + CP++ + E++
Sbjct: 202 VPGGEIESSCVLDGVMLNKDVTHPKMRRRIENPRIVLLDCPLEYRKGESQ 251
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 81.8 bits (193), Expect = 2e-16
Identities = 57/215 (26%), Positives = 101/215 (46%), Gaps = 2/215 (0%)
Frame = +3
Query: 288 VRSAYGPNGMNKMIINHIDKQFV-TSDAGTIIRELDVEHPAAKLMVLASQMQDAEVGDGT 464
V+S GP GM+K++ ++ V T+D TI++ + +++ AAK++V S++QD EVGDGT
Sbjct: 36 VKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGT 95
Query: 465 NFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCLEILPSLICNEIKDTKNIKEVT 644
V V + + I DGY A ++ L + + D +
Sbjct: 96 TSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRASSIDNSSDPAKFRSDL 155
Query: 645 KGIVAAIMSKQYGHEQFISELVTKACVAILPEKTTFNVDNIRVCKILGAGLLQSEVLSGM 824
+ I +S + Q + A A+L K + N+DNI++ KILG L S + G
Sbjct: 156 ENIARTTLSSKI-LSQNKNHFAQLAVDAVLRLKGSTNLDNIQIIKILGGKLDDSFLDEGF 214
Query: 825 VFRREVEGDVSSA-KNAKIAVYSCPIDIIQTETKG 926
+ + + + +NA I + + +D + + G
Sbjct: 215 ILNKTIGVNCPKVMENANILIANTAMDTDKVKVFG 249
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 69.7 bits (163), Expect = 8e-13
Identities = 59/265 (22%), Positives = 114/265 (43%), Gaps = 4/265 (1%)
Frame = +3
Query: 243 AVYRNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVTSDAGTIIRELDVEHPAAKLMV 422
A+ NI+A ++S GP G KM+++ +T D ++ E+ +++P A +
Sbjct: 17 ALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLTEMQIQNPTASCIA 76
Query: 423 LASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCLEILPSLI 602
A+ QD GDGT V +L G R G+ S I+DG+ A ++ L L S
Sbjct: 77 KAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFLDSFK 136
Query: 603 CNEIKDTKNIKEVTKGIVAAIMSKQYGHEQFISELVTKACVAILPEKTTFNVDNIRVCKI 782
+ D + + V K ++ +S + + ++ V A + I ++ + + K+
Sbjct: 137 TDFEVDREVLLNVAKTSLSTKISSKV--VESLAPAVVDAILTIRRPDEPIDLHMVEIMKM 194
Query: 783 LGAGLLQSEVLSGMVFRREV-EGDV-SSAKNAKIAVYSCPIDIIQTETKGTXLIXSAD-- 950
++++ G++ D+ KNA I + + ++ ++E +++
Sbjct: 195 QNRSASDTQLIRGLLLDHGARHPDMPKQVKNAYILILNVSLEYEKSEINSGFFYSTSEQR 254
Query: 951 ELLNXSKEKIFTEKXXXIFRLWGEV 1025
E L S+ K K I L EV
Sbjct: 255 ERLVESERKFVDNKLRKIVELKKEV 279
>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 31.5 bits (68), Expect = 0.24
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = -1
Query: 301 YAERTLCANCLQALIFRYTAXSNPENIRAPAF 206
+AER C NC L F YT NP I A F
Sbjct: 65 FAERIFCKNCGTTLYFAYTNGKNPYFINAWLF 96
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 511 NYSAWE*LPVKLLMDMREHLTNVWKSFLLS 600
NYS WE + + L +R L N KSF+L+
Sbjct: 559 NYSLWEAVGISLNYIVRNGLINSHKSFVLT 588
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 26.2 bits (55), Expect = 9.2
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 609 EIKDTKNIK-EVTKGIVAAIMSKQYGHEQFISELV 710
E+ T NIK + ++G++ S QYG Q ISELV
Sbjct: 76 EVNVTFNIKADPSEGLLNFSQSLQYGQCQGISELV 110
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 9.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -1
Query: 847 PSTSRLNTIPESTSDCNSPAPRILHTLILSTLNVVFSGSIATQAFVTSSEMNCS 686
P TS + P +TSD +P PR + +++ +S S ++ +TSS + S
Sbjct: 117 PYTSSVACFPYATSDAPNPIPR-GDSATSTSIAPTYSASDSSATTITSSSPSTS 169
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,734,324
Number of Sequences: 5004
Number of extensions: 69688
Number of successful extensions: 189
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 655427878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -