Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_A20
         (1236 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...   158   2e-39
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    29   1.3  

>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score =  158 bits (383), Expect = 2e-39
 Identities = 93/266 (34%), Positives = 138/266 (51%), Gaps = 5/266 (1%)
 Frame = +1

Query: 175 LLVVIVDTNPNQSYIXAAPKMLTNVLDAVVAFSNSHLMQXASNELAVIGCHFHKSEYLYP 354
           LLVVI+D NP   Y  +    ++ VL  +  F N+HL     N +AV+  H  K EYLYP
Sbjct: 25  LLVVILDANPASWYSLSKKVPVSKVLADITVFLNAHLAFHHDNRVAVLASHSDKVEYLYP 84

Query: 355 SPGKPLDVXQID-----GQYELFTLVEKTIKMRLVNLIKSQPQEEKPGESXXXXXXXXXX 519
           S      V ++D       Y  F  V+  +   +  L+ S  +  +  ++          
Sbjct: 85  SIAPEQKVAEVDPTKEANTYRKFREVDDLVLSGMKRLMSSTDKVSR--KTMISGALSRAL 142

Query: 520 CFIARSRRSAIPGLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQVLIDVCSVDKHLS 699
            +I + +      LR  SRIL+ + + D A QYI  MN  F AQK+ + I+VC+++    
Sbjct: 143 AYINQVQNKNT--LR--SRILIFSLTGDVALQYIPTMNCIFCAQKKNIPINVCNIEGGTL 198

Query: 700 LLQQGCDITGGLYLKIPSLEGLLQYLLWVFLPEANERSKLVLPGRGRVDYRAACFXHREL 879
            L+Q  D TGG+YLK+ + +GLLQYL+    P+ N R  L  P +  VD+RA CF H+++
Sbjct: 199 FLEQAADATGGIYLKVDNPKGLLQYLMMSLFPDQNLRKHLNTPNQANVDFRATCFCHKKV 258

Query: 880 XTIGYVCSXWLECFLQFSPICTTCHT 957
             IG+VCS  L  F +    C+TCHT
Sbjct: 259 LDIGFVCSVCLSIFCEPRVHCSTCHT 284


>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 23/92 (25%), Positives = 39/92 (42%)
 Frame = +1

Query: 553 PGLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQVLIDVCSVDKHLSLLQQGCDITGG 732
           P     +R   VT S D A      +N +    KE  LID+    + +S L++  D+   
Sbjct: 229 PAPEEETRKADVTNSLDPANVLSTELNTWHVMPKEAWLIDISMSSQPISSLKEHPDLKPT 288

Query: 733 LYLKIPSLEGLLQYLLWVFLPEANERSKLVLP 828
           LY+   ++  +L+      L    ++ K V P
Sbjct: 289 LYIHDVNVSYMLKLKASRSLLSEIKKEKSVFP 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,737,763
Number of Sequences: 5004
Number of extensions: 67561
Number of successful extensions: 132
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 671365334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)