Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_A20
(1236 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z30093-1|CAA82909.1| 303|Homo sapiens basic transcription facto... 242 2e-63
BC065250-1|AAH65250.1| 308|Homo sapiens general transcription f... 241 3e-63
BC047868-1|AAH47868.2| 303|Homo sapiens GTF2H3 protein protein. 241 3e-63
BC039726-1|AAH39726.1| 303|Homo sapiens GTF2H3 protein protein. 241 3e-63
AF548661-1|AAN40702.1| 308|Homo sapiens general transcription f... 241 3e-63
BC031030-1|AAH31030.1| 235|Homo sapiens Unknown (protein for IM... 206 2e-52
>Z30093-1|CAA82909.1| 303|Homo sapiens basic transcription factor 2,
35 kD subunit protein.
Length = 303
Score = 242 bits (593), Expect = 2e-63
Identities = 128/294 (43%), Positives = 168/294 (57%), Gaps = 18/294 (6%)
Frame = +1
Query: 175 LLVVIVDTNP---NQSYIXAAPKMLTNVLDAVVAFSNSHLMQXASNELAVIGCHFHKSEY 345
LLV++VD NP + + + L+ +DAV+ NSHL SN+LAVI H +S +
Sbjct: 10 LLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRF 69
Query: 346 LYPS-----------PGKPLDVXQI---DGQYELFTLVEKTIKMRLVNLIKSQPQEEKPG 483
LYP PG P + DG+YEL T + I + +L+ + +
Sbjct: 70 LYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHT 129
Query: 484 ESXXXXXXXXXXCFIARSRRSAIPGLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQV 663
E+ C+I R + SRILV+ + D+A QY+N+MNV F AQK+ +
Sbjct: 130 ETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNI 189
Query: 664 LIDVCSVDKHLSLLQQGCDITGGLYLKIPSLEGLLQYLLWVFLPEANERSKLVLPGRGRV 843
LID C +D LLQQ CDITGGLYLK+P + LLQYLLWVFLP+ ++RS+L+LP V
Sbjct: 190 LIDACVLDSDSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLILPPPVHV 249
Query: 844 DYRAACFXHRELXTIGYVCSXWLECFLQFSPICTTCHTXXKIGGPPI-KPRRXN 1002
DYRAACF HR L IGYVCS L F FSPICTTC T KI PP+ K ++ N
Sbjct: 250 DYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFKISLPPVLKAKKRN 303
>BC065250-1|AAH65250.1| 308|Homo sapiens general transcription
factor IIH, polypeptide 3, 34kDa protein.
Length = 308
Score = 241 bits (591), Expect = 3e-63
Identities = 126/287 (43%), Positives = 164/287 (57%), Gaps = 17/287 (5%)
Frame = +1
Query: 175 LLVVIVDTNP---NQSYIXAAPKMLTNVLDAVVAFSNSHLMQXASNELAVIGCHFHKSEY 345
LLV++VD NP + + + L+ +DAV+ NSHL SN+LAVI H +S +
Sbjct: 10 LLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRF 69
Query: 346 LYPS-----------PGKPLDVXQI---DGQYELFTLVEKTIKMRLVNLIKSQPQEEKPG 483
LYP PG P + DG+YEL T + I + +L+ + +
Sbjct: 70 LYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHT 129
Query: 484 ESXXXXXXXXXXCFIARSRRSAIPGLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQV 663
E+ C+I R + SRILV+ + D+A QY+N+MNV F AQK+ +
Sbjct: 130 ETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNI 189
Query: 664 LIDVCSVDKHLSLLQQGCDITGGLYLKIPSLEGLLQYLLWVFLPEANERSKLVLPGRGRV 843
LID C +D LLQQ CDITGGLYLK+P + LLQYLLWVFLP+ ++RS+L+LP V
Sbjct: 190 LIDACVLDSDSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLILPPPVHV 249
Query: 844 DYRAACFXHRELXTIGYVCSXWLECFLQFSPICTTCHTXXKIGGPPI 984
DYRAACF HR L IGYVCS L F FSPICTTC T KI PP+
Sbjct: 250 DYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFKISLPPV 296
>BC047868-1|AAH47868.2| 303|Homo sapiens GTF2H3 protein protein.
Length = 303
Score = 241 bits (591), Expect = 3e-63
Identities = 126/287 (43%), Positives = 164/287 (57%), Gaps = 17/287 (5%)
Frame = +1
Query: 175 LLVVIVDTNP---NQSYIXAAPKMLTNVLDAVVAFSNSHLMQXASNELAVIGCHFHKSEY 345
LLV++VD NP + + + L+ +DAV+ NSHL SN+LAVI H +S +
Sbjct: 5 LLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRF 64
Query: 346 LYPS-----------PGKPLDVXQI---DGQYELFTLVEKTIKMRLVNLIKSQPQEEKPG 483
LYP PG P + DG+YEL T + I + +L+ + +
Sbjct: 65 LYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHT 124
Query: 484 ESXXXXXXXXXXCFIARSRRSAIPGLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQV 663
E+ C+I R + SRILV+ + D+A QY+N+MNV F AQK+ +
Sbjct: 125 ETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNI 184
Query: 664 LIDVCSVDKHLSLLQQGCDITGGLYLKIPSLEGLLQYLLWVFLPEANERSKLVLPGRGRV 843
LID C +D LLQQ CDITGGLYLK+P + LLQYLLWVFLP+ ++RS+L+LP V
Sbjct: 185 LIDACVLDSDSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLILPPPVHV 244
Query: 844 DYRAACFXHRELXTIGYVCSXWLECFLQFSPICTTCHTXXKIGGPPI 984
DYRAACF HR L IGYVCS L F FSPICTTC T KI PP+
Sbjct: 245 DYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFKISLPPV 291
>BC039726-1|AAH39726.1| 303|Homo sapiens GTF2H3 protein protein.
Length = 303
Score = 241 bits (591), Expect = 3e-63
Identities = 126/287 (43%), Positives = 164/287 (57%), Gaps = 17/287 (5%)
Frame = +1
Query: 175 LLVVIVDTNP---NQSYIXAAPKMLTNVLDAVVAFSNSHLMQXASNELAVIGCHFHKSEY 345
LLV++VD NP + + + L+ +DAV+ NSHL SN+LAVI H +S +
Sbjct: 5 LLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRF 64
Query: 346 LYPS-----------PGKPLDVXQI---DGQYELFTLVEKTIKMRLVNLIKSQPQEEKPG 483
LYP PG P + DG+YEL T + I + +L+ + +
Sbjct: 65 LYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHT 124
Query: 484 ESXXXXXXXXXXCFIARSRRSAIPGLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQV 663
E+ C+I R + SRILV+ + D+A QY+N+MNV F AQK+ +
Sbjct: 125 ETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNI 184
Query: 664 LIDVCSVDKHLSLLQQGCDITGGLYLKIPSLEGLLQYLLWVFLPEANERSKLVLPGRGRV 843
LID C +D LLQQ CDITGGLYLK+P + LLQYLLWVFLP+ ++RS+L+LP V
Sbjct: 185 LIDACVLDSDSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLILPPPVHV 244
Query: 844 DYRAACFXHRELXTIGYVCSXWLECFLQFSPICTTCHTXXKIGGPPI 984
DYRAACF HR L IGYVCS L F FSPICTTC T KI PP+
Sbjct: 245 DYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFKISLPPV 291
>AF548661-1|AAN40702.1| 308|Homo sapiens general transcription
factor IIH, polypeptide 3, 34kDa protein.
Length = 308
Score = 241 bits (591), Expect = 3e-63
Identities = 126/287 (43%), Positives = 164/287 (57%), Gaps = 17/287 (5%)
Frame = +1
Query: 175 LLVVIVDTNP---NQSYIXAAPKMLTNVLDAVVAFSNSHLMQXASNELAVIGCHFHKSEY 345
LLV++VD NP + + + L+ +DAV+ NSHL SN+LAVI H +S +
Sbjct: 10 LLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRF 69
Query: 346 LYPS-----------PGKPLDVXQI---DGQYELFTLVEKTIKMRLVNLIKSQPQEEKPG 483
LYP PG P + DG+YEL T + I + +L+ + +
Sbjct: 70 LYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHT 129
Query: 484 ESXXXXXXXXXXCFIARSRRSAIPGLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQV 663
E+ C+I R + SRILV+ + D+A QY+N+MNV F AQK+ +
Sbjct: 130 ETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNI 189
Query: 664 LIDVCSVDKHLSLLQQGCDITGGLYLKIPSLEGLLQYLLWVFLPEANERSKLVLPGRGRV 843
LID C +D LLQQ CDITGGLYLK+P + LLQYLLWVFLP+ ++RS+L+LP V
Sbjct: 190 LIDACVLDSDSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLILPPPVHV 249
Query: 844 DYRAACFXHRELXTIGYVCSXWLECFLQFSPICTTCHTXXKIGGPPI 984
DYRAACF HR L IGYVCS L F FSPICTTC T KI PP+
Sbjct: 250 DYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFKISLPPV 296
>BC031030-1|AAH31030.1| 235|Homo sapiens Unknown (protein for
IMAGE:4724313) protein.
Length = 235
Score = 206 bits (502), Expect = 2e-52
Identities = 97/199 (48%), Positives = 123/199 (61%)
Frame = +1
Query: 388 DGQYELFTLVEKTIKMRLVNLIKSQPQEEKPGESXXXXXXXXXXCFIARSRRSAIPGLRT 567
DG+YEL T + I + +L+ + + E+ C+I R +
Sbjct: 25 DGKYELLTSANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEM 84
Query: 568 SSRILVVTGSADTAAQYINYMNVFFTAQKEQVLIDVCSVDKHLSLLQQGCDITGGLYLKI 747
SRILV+ + D+A QY+N+MNV F AQK+ +LID C +D LLQQ CDITGGLYLK+
Sbjct: 85 KSRILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDSDSGLLQQACDITGGLYLKV 144
Query: 748 PSLEGLLQYLLWVFLPEANERSKLVLPGRGRVDYRAACFXHRELXTIGYVCSXWLECFLQ 927
P + LLQYLLWVFLP+ ++RS+L+LP VDYRAACF HR L IGYVCS L F
Sbjct: 145 PQMPSLLQYLLWVFLPDQDQRSRLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCN 204
Query: 928 FSPICTTCHTXXKIGGPPI 984
FSPICTTC T KI PP+
Sbjct: 205 FSPICTTCETAFKISLPPV 223
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,404,726
Number of Sequences: 237096
Number of extensions: 2820545
Number of successful extensions: 8888
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8876
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 17559747370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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