Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_A20
         (1236 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47357-4|CAA87423.1|  345|Caenorhabditis elegans Hypothetical pr...    98   1e-20
Z92781-1|CAB07180.2|  250|Caenorhabditis elegans Hypothetical pr...    29   5.1  
AC024857-1|AAK31566.2|  869|Caenorhabditis elegans Temporarily a...    29   6.8  

>Z47357-4|CAA87423.1|  345|Caenorhabditis elegans Hypothetical
           protein ZK1128.4 protein.
          Length = 345

 Score = 98.3 bits (234), Expect = 1e-20
 Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 2/156 (1%)
 Frame = +1

Query: 535 SRRSAIPGLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQVLIDVCSVDKHLS--LLQ 708
           S +S     + ++R +V++ +    +++ + MN+FF+A K+ + +DV S+    +  +LQ
Sbjct: 184 SEQSETASEKATNRAVVISITPIMGSEHGSLMNLFFSAAKQSICVDVVSMGDDFTGGILQ 243

Query: 709 QGCDITGGLYLKIPSLEGLLQYLLWVFLPEANERSKLVLPGRGRVDYRAACFXHRELXTI 888
           Q  DITGG +L     + LL+ L+   L +   R+         VDYRA+C  H +L + 
Sbjct: 244 QAADITGGSFLHAKKPQTLLKILMTNMLTDPTHRAVFSKLSHNSVDYRASCACHHQLVSS 303

Query: 889 GYVCSXWLECFLQFSPICTTCHTXXKIGGPPIKPRR 996
           G+VCS  L    Q++PIC  C     I   PIKP R
Sbjct: 304 GWVCSICLSVLCQYTPICKVCKAAFTIANLPIKPNR 339



 Score = 29.1 bits (62), Expect = 6.8
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +1

Query: 247 VLDAVVAFSNSHLMQXASNELAV 315
           +L A+V+F N+HL Q A+N+L V
Sbjct: 79  ILRAIVSFCNAHLGQSANNQLLV 101


>Z92781-1|CAB07180.2|  250|Caenorhabditis elegans Hypothetical
           protein F09C3.2 protein.
          Length = 250

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 526 IARSRRSAIPGLRTSSRILVVTGSADTAAQYINY 627
           IA  +   I GLR S  ++   G+ DT AQY +Y
Sbjct: 194 IADLKMGKIAGLRASVAVMTGVGTRDTLAQYSDY 227


>AC024857-1|AAK31566.2|  869|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 305 protein.
          Length = 869

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
 Frame = +1

Query: 712 GCDITGGLYLKIPSLEGLLQYLLWVFLPEANER-SKLVLP-----GRGRVDYRA-ACFXH 870
           GC   G +   +PSL  ++ Y LW  +  ++++  KL +P         +D+    C   
Sbjct: 319 GCLTVGRILFGVPSLFEIVTYDLWKMMGCSSKKVDKLPIPLKEMNALRELDHHVIRCRIP 378

Query: 871 RELXTIGYVCSXW-LECFLQFSPICTTCHT 957
           R      YVCS     C+    P+    HT
Sbjct: 379 RSQDMCSYVCSVVDARCYCTIRPLARGSHT 408


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,292,466
Number of Sequences: 27780
Number of extensions: 402876
Number of successful extensions: 892
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3422502224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)