Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_A17
         (1286 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    46   1e-05
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    40   7e-04
SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces...    27   4.2  
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...    27   4.2  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    27   7.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   7.4  
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    26   9.8  
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    26   9.8  

>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 16/27 (59%), Positives = 22/27 (81%)
 Frame = +3

Query: 693 HAKVAQKSYGNEKRFFCPPPCIYLFGD 773
           H+ V QKSYG+EKR+ CPPP +Y+ G+
Sbjct: 184 HSSVIQKSYGSEKRYLCPPPMVYINGN 210


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 39.9 bits (89), Expect = 7e-04
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 702 VAQKSYGNEKRFFCPPPCIYLFGDGW 779
           + QKSYG E+R+ CPP  +YL G  W
Sbjct: 480 LCQKSYGTERRYLCPPIVLYLLGTTW 505


>SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 252

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 101 RTFIKXAEQTKFKQXQKFANSLSNSFLKLGTGKFSDSSENSNVEQVFLNE 250
           +TF +    T+ KQ  +F N+     LK+G   F   S+ S    V +NE
Sbjct: 46  KTFARE-HATEIKQNSQFRNTFVKLALKIGLDPFVSGSDESAWAAVGMNE 94


>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -2

Query: 520 YWCGMLATAKSPSAYPHIFNGIVEKLCGVISSPRHHDYISITEDL 386
           ++  + A     S++PHIFNG  +  C +  +     Y  +T D+
Sbjct: 205 HFASIQAAPSFSSSFPHIFNGAKDIPCLIPCAIDQDPYFRLTRDV 249


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -3

Query: 261 LAHVSFKNTCSTLEFSDESLNLPVPSLRKEFDKLLANFXICLNFVCSAXL 112
           L +VS +   ST ++  E  N   P+ R  FD LL  F    NFV  + L
Sbjct: 417 LDNVSDELRGSTAQYITEVTNAFAPNKRWHFDTLLRVFKSAGNFVSESTL 466


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 174  PFLNLEPVNLVTRLKIPMLNRCF*MKRVLV 263
            PFLNL  +NL+ + ++  L++C+ +   L+
Sbjct: 1059 PFLNLNSLNLLLKSELFQLDQCYSLSLYLI 1088


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -3

Query: 252 VSFKNTCSTLEFSDESLNLPVPSLRKEFDKLLAN 151
           + FK+  STL+F   ++++   +++ E DKL+ N
Sbjct: 6   IHFKSQ-STLDFDSVAVSISASTMKNELDKLVLN 38


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
 Frame = +2

Query: 113 KXAEQTKFKQXQKFANSLSNSFLKLGTGKFSDSS----ENSNVEQVFLNETCASSHRN*F 280
           K  +Q + KQ Q+F N L +SFL L  G    +     EN+ V    + +  +S   N  
Sbjct: 254 KSPKQEELKQRQEFLNELISSFL-LNNGFVETAKKFCPENTEVSDASIRKEISSMLANGQ 312

Query: 281 LLA*II*QKKGSSDFPIDLQKC 346
           L    +   K    +P+ +Q+C
Sbjct: 313 L---DLAMTKIDCQYPVAIQEC 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,767,583
Number of Sequences: 5004
Number of extensions: 69635
Number of successful extensions: 165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 701473834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)