Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_A17
(1286 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U49795-1|AAB03859.1| 673|Caenorhabditis elegans DNA-binding pro... 83 5e-16
U49794-1|AAB03858.1| 673|Caenorhabditis elegans lag-1 protein. 83 5e-16
AF100663-8|AAM98006.1| 671|Caenorhabditis elegans Lin-12 and gl... 83 5e-16
AF100663-7|AAC68978.3| 673|Caenorhabditis elegans Lin-12 and gl... 83 5e-16
U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical pr... 30 4.1
Z47070-3|CAA87341.1| 528|Caenorhabditis elegans Hypothetical pr... 29 7.1
>U49795-1|AAB03859.1| 673|Caenorhabditis elegans DNA-binding protein
LAG-1 protein.
Length = 673
Score = 82.6 bits (195), Expect = 5e-16
Identities = 59/160 (36%), Positives = 76/160 (47%), Gaps = 36/160 (22%)
Frame = +3
Query: 630 LTREAMERYL--RDRSDMVVVILHAKVAQKSYGNEKRFFCPPPCIYLFGDGWXXXXXXXX 803
LT + M +L +++ + V+ I HAKVAQKSYGNEKRFFCPPPCIYL G GW
Sbjct: 198 LTSDRMIDFLSNKEKYECVISIFHAKVAQKSYGNEKRFFCPPPCIYLIGQGWKLKKDRVA 257
Query: 804 XXGET------------------EQAAQLCAFIGXGNSDQDMQQXDLNNGK--------- 902
+T +QA +L A+IG G+ + QQ D + GK
Sbjct: 258 QLYKTLKASAQKDAAIENDPIHEQQATELVAYIGIGSDTSERQQLDFSTGKVRHPGDQRQ 317
Query: 903 -----QYCAAKXGTYLIXITKTLY--AICKMFYGNGHDXG 1001
YCAAK Y+ K Y + FYG G + G
Sbjct: 318 DPNIYDYCAAKT-LYISDSDKRKYFDLNAQFFYGCGMEIG 356
>U49794-1|AAB03858.1| 673|Caenorhabditis elegans lag-1 protein.
Length = 673
Score = 82.6 bits (195), Expect = 5e-16
Identities = 59/160 (36%), Positives = 76/160 (47%), Gaps = 36/160 (22%)
Frame = +3
Query: 630 LTREAMERYL--RDRSDMVVVILHAKVAQKSYGNEKRFFCPPPCIYLFGDGWXXXXXXXX 803
LT + M +L +++ + V+ I HAKVAQKSYGNEKRFFCPPPCIYL G GW
Sbjct: 198 LTSDRMIDFLSNKEKYECVISIFHAKVAQKSYGNEKRFFCPPPCIYLIGQGWKLKKDRVA 257
Query: 804 XXGET------------------EQAAQLCAFIGXGNSDQDMQQXDLNNGK--------- 902
+T +QA +L A+IG G+ + QQ D + GK
Sbjct: 258 QLYKTLKASAQKDAAIENDPIHEQQATELVAYIGIGSDTSERQQLDFSTGKVRHPGDQRQ 317
Query: 903 -----QYCAAKXGTYLIXITKTLY--AICKMFYGNGHDXG 1001
YCAAK Y+ K Y + FYG G + G
Sbjct: 318 DPNIYDYCAAKT-LYISDSDKRKYFDLNAQFFYGCGMEIG 356
>AF100663-8|AAM98006.1| 671|Caenorhabditis elegans Lin-12 and glp-1
phenotype protein1, isoform b protein.
Length = 671
Score = 82.6 bits (195), Expect = 5e-16
Identities = 59/160 (36%), Positives = 76/160 (47%), Gaps = 36/160 (22%)
Frame = +3
Query: 630 LTREAMERYL--RDRSDMVVVILHAKVAQKSYGNEKRFFCPPPCIYLFGDGWXXXXXXXX 803
LT + M +L +++ + V+ I HAKVAQKSYGNEKRFFCPPPCIYL G GW
Sbjct: 196 LTSDRMIDFLSNKEKYECVISIFHAKVAQKSYGNEKRFFCPPPCIYLIGQGWKLKKDRVA 255
Query: 804 XXGET------------------EQAAQLCAFIGXGNSDQDMQQXDLNNGK--------- 902
+T +QA +L A+IG G+ + QQ D + GK
Sbjct: 256 QLYKTLKASAQKDAAIENDPIHEQQATELVAYIGIGSDTSERQQLDFSTGKVRHPGDQRQ 315
Query: 903 -----QYCAAKXGTYLIXITKTLY--AICKMFYGNGHDXG 1001
YCAAK Y+ K Y + FYG G + G
Sbjct: 316 DPNIYDYCAAKT-LYISDSDKRKYFDLNAQFFYGCGMEIG 354
>AF100663-7|AAC68978.3| 673|Caenorhabditis elegans Lin-12 and glp-1
phenotype protein1, isoform a protein.
Length = 673
Score = 82.6 bits (195), Expect = 5e-16
Identities = 59/160 (36%), Positives = 76/160 (47%), Gaps = 36/160 (22%)
Frame = +3
Query: 630 LTREAMERYL--RDRSDMVVVILHAKVAQKSYGNEKRFFCPPPCIYLFGDGWXXXXXXXX 803
LT + M +L +++ + V+ I HAKVAQKSYGNEKRFFCPPPCIYL G GW
Sbjct: 198 LTSDRMIDFLSNKEKYECVISIFHAKVAQKSYGNEKRFFCPPPCIYLIGQGWKLKKDRVA 257
Query: 804 XXGET------------------EQAAQLCAFIGXGNSDQDMQQXDLNNGK--------- 902
+T +QA +L A+IG G+ + QQ D + GK
Sbjct: 258 QLYKTLKASAQKDAAIENDPIHEQQATELVAYIGIGSDTSERQQLDFSTGKVRHPGDQRQ 317
Query: 903 -----QYCAAKXGTYLIXITKTLY--AICKMFYGNGHDXG 1001
YCAAK Y+ K Y + FYG G + G
Sbjct: 318 DPNIYDYCAAKT-LYISDSDKRKYFDLNAQFFYGCGMEIG 356
>U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical
protein C13B9.3 protein.
Length = 515
Score = 29.9 bits (64), Expect = 4.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 300 YIIHASKN*LRWELAHVSFKNTCSTLEFS 214
Y H +KN + W LA + N+ TLEFS
Sbjct: 433 YEYHKTKNVIVWSLAVIDSSNSSGTLEFS 461
>Z47070-3|CAA87341.1| 528|Caenorhabditis elegans Hypothetical
protein T09B9.4 protein.
Length = 528
Score = 29.1 bits (62), Expect = 7.1
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = +3
Query: 618 EERRLTREAMER-YLR---DRSDMVVVILHAKVAQKSYGNEKRFFCPPPCI 758
EE+R ++A+E YL D D V V LHA +QK GN P +
Sbjct: 304 EEKRKLQQALEMAYLNGFVDFDDTVEVALHASASQKYNGNSPNVSANSPVV 354
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,193,274
Number of Sequences: 27780
Number of extensions: 398429
Number of successful extensions: 764
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3599888010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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