Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_A16
         (1345 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79596-2|CAC42251.1|  838|Caenorhabditis elegans Hypothetical pr...    32   1.1  
Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical pr...    32   1.1  
L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.      32   1.1  
AF167982-1|AAD50438.1|  838|Caenorhabditis elegans dynamin protein.    32   1.1  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   7.5  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   7.5  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   7.5  

>Z79596-2|CAC42251.1|  838|Caenorhabditis elegans Hypothetical
           protein C02C6.1b protein.
          Length = 838

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +2

Query: 911 GPXXXPXPXGAPPSXGXAPXPPRG 982
           GP   P P  APP    AP PPRG
Sbjct: 762 GPSPVPRPAPAPPGGRQAPMPPRG 785


>Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical
           protein C02C6.1a protein.
          Length = 830

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +2

Query: 911 GPXXXPXPXGAPPSXGXAPXPPRG 982
           GP   P P  APP    AP PPRG
Sbjct: 762 GPSPVPRPAPAPPGGRQAPMPPRG 785


>L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.
          Length = 830

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +2

Query: 911 GPXXXPXPXGAPPSXGXAPXPPRG 982
           GP   P P  APP    AP PPRG
Sbjct: 762 GPSPVPRPAPAPPGGRQAPMPPRG 785


>AF167982-1|AAD50438.1|  838|Caenorhabditis elegans dynamin protein.
          Length = 838

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +2

Query: 911 GPXXXPXPXGAPPSXGXAPXPPRG 982
           GP   P P  APP    AP PPRG
Sbjct: 762 GPSPVPRPAPAPPGGRQAPMPPRG 785


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 911 GPXXXPXPXGAPPSXGXAPXPP 976
           GP   P P G PP  G  P PP
Sbjct: 725 GPPPPPPPGGLPPITGGPPPPP 746



 Score = 29.1 bits (62), Expect = 7.5
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 911 GPXXXPXPXGAPPSXGXAPXPP 976
           GP   P P G PP  G  P PP
Sbjct: 741 GPPPPPPPGGLPPISGGPPPPP 762


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 911 GPXXXPXPXGAPPSXGXAPXPP 976
           GP   P P G PP  G  P PP
Sbjct: 725 GPPPPPPPGGLPPITGGPPPPP 746



 Score = 29.1 bits (62), Expect = 7.5
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 911 GPXXXPXPXGAPPSXGXAPXPP 976
           GP   P P G PP  G  P PP
Sbjct: 741 GPPPPPPPGGLPPISGGPPPPP 762


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 911 GPXXXPXPXGAPPSXGXAPXPP 976
           GP   P P G PP  G  P PP
Sbjct: 308 GPPPPPPPGGLPPITGGPPPPP 329



 Score = 29.1 bits (62), Expect = 7.5
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 911 GPXXXPXPXGAPPSXGXAPXPP 976
           GP   P P G PP  G  P PP
Sbjct: 324 GPPPPPPPGGLPPISGGPPPPP 345


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,525,187
Number of Sequences: 27780
Number of extensions: 131820
Number of successful extensions: 765
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3777624114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)