Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_A15
(1276 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.26
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.59
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 1.8
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p... 29 1.8
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 7.3
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 7.3
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 7.3
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 7.3
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.26
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 983 PPXGGGXXXXXXPPPPPPP 927
PP G G PPPPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPP 343
Score = 27.1 bits (57), Expect(2) = 0.91
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 982 PXGGGGXXXXXXPPPPPPP 926
P G G PPPPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPP 343
Score = 23.8 bits (49), Expect(2) = 1.2
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 946 PPPPPPP 926
PPPPPPP
Sbjct: 311 PPPPPPP 317
Score = 23.8 bits (49), Expect(2) = 1.2
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 943 PPPPPPP 923
PPPPPPP
Sbjct: 337 PPPPPPP 343
Score = 21.0 bits (42), Expect(2) = 0.91
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -1
Query: 940 PPPPPP 923
PPPPPP
Sbjct: 361 PPPPPP 366
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.3 bits (65), Expect = 0.59
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 983 PPXGGGXXXXXXPPPPPPPP 924
PP G PPPPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -3
Query: 983 PPXGGGXXXXXXPPPPPPPP 924
PP PPPPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782
Score = 26.6 bits (56), Expect = 7.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 947 PPPPPPPP 924
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
Score = 26.6 bits (56), Expect = 7.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 946 PPPPPPPP 923
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
Score = 26.6 bits (56), Expect = 7.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 946 PPPPPPPP 923
PPPPPPPP
Sbjct: 775 PPPPPPPP 782
Score = 26.6 bits (56), Expect = 7.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 946 PPPPPPPP 923
PPPPPPPP
Sbjct: 776 PPPPPPPP 783
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -1
Query: 982 PXGGGGXXXXXXPPPPPPPP 923
P G PPPPPPPP
Sbjct: 295 PSSGDSANGGLPPPPPPPPP 314
Score = 28.3 bits (60), Expect = 2.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -3
Query: 983 PPXGGGXXXXXXPPPPPPPP 924
P G PPPPPPPP
Sbjct: 295 PSSGDSANGGLPPPPPPPPP 314
>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 571
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = -3
Query: 338 TGLKYIQNNPTLLKSVLLIQIDKTRRIFTI*ISFNK*F*LAQVKFSH 198
T L+Y+Q P ++ +++DK+ + + +SF K F LA + F H
Sbjct: 237 TALRYLQKYPEPRAAIRAMRLDKSLK---VPVSFEKEFALADLAFRH 280
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 4.2
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -3
Query: 983 PPXGGGXXXXXXPPPPPPP 927
PP G PPPPPPP
Sbjct: 12 PPPPPGFEPPSQPPPPPPP 30
Score = 26.6 bits (56), Expect = 7.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 947 PPPPPPPP 924
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.6 bits (56), Expect = 7.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 946 PPPPPPPP 923
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 7.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 947 PPPPPPPP 924
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 7.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 946 PPPPPPPP 923
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 7.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 947 PPPPPPPP 924
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
Score = 26.6 bits (56), Expect = 7.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 946 PPPPPPPP 923
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 7.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 947 PPPPPPPP 924
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect = 7.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 946 PPPPPPPP 923
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 7.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 947 PPPPPPPP 924
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 7.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 946 PPPPPPPP 923
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 7.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 947 PPPPPPPP 924
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 7.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 946 PPPPPPPP 923
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 7.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 947 PPPPPPPP 924
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Score = 26.6 bits (56), Expect = 7.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 946 PPPPPPPP 923
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,288,380
Number of Sequences: 5004
Number of extensions: 53980
Number of successful extensions: 367
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 693525122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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