Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_A14
         (1323 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024205-3|AAF36045.1|  308|Caenorhabditis elegans Hypothetical ...    30   4.2  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   7.3  

>AC024205-3|AAF36045.1|  308|Caenorhabditis elegans Hypothetical
           protein Y73C8B.2 protein.
          Length = 308

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 568 IQYIIKNNSSYAVKLLLFGNNNSIATRKIYNEK 470
           I+YI K N  +  KL++FG N+ +   +I  EK
Sbjct: 212 IEYIEKLNQKHTKKLIVFGGNDHLVEEEIVLEK 244


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical protein
            T24B8.4 protein.
          Length = 866

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
 Frame = -3

Query: 1237 GPPXXXFFFXGGXXXPXPXXXXLXPXXIFXGSPXXXPXPXXXXXXP-PPXP 1088
            G P     F GG   P P    + P     G+P   P P      P PP P
Sbjct: 82   GIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPPSGLGVAPQPPRP 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,804,478
Number of Sequences: 27780
Number of extensions: 338123
Number of successful extensions: 585
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3704777368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)