Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_A13
         (1259 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    25   1.8  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    25   1.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   1.8  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   2.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   5.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   5.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   7.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   9.8  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 7/25 (28%), Positives = 20/25 (80%)
 Frame = -2

Query: 496 TRHYLTVVN*EGYREYILSMVLESS 422
           +++Y+T+++  G+R++I +M+  +S
Sbjct: 10  SKYYVTIIDAPGHRDFIKNMITGTS 34


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 7/25 (28%), Positives = 20/25 (80%)
 Frame = -2

Query: 496 TRHYLTVVN*EGYREYILSMVLESS 422
           +++Y+T+++  G+R++I +M+  +S
Sbjct: 26  SKYYVTIIDAPGHRDFIKNMITGTS 50


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 7/25 (28%), Positives = 20/25 (80%)
 Frame = -2

Query: 496 TRHYLTVVN*EGYREYILSMVLESS 422
           +++Y+T+++  G+R++I +M+  +S
Sbjct: 83  SKYYVTIIDAPGHRDFIKNMITGTS 107


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 7/24 (29%), Positives = 19/24 (79%)
 Frame = -2

Query: 493 RHYLTVVN*EGYREYILSMVLESS 422
           ++Y+T+++  G+R++I +M+  +S
Sbjct: 84  KYYVTIIDAPGHRDFIKNMITGTS 107


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +1

Query: 562 WTQRLGVMCQILTQSCQPHYCI-LW 633
           W+  LG +C + +  C P Y I +W
Sbjct: 527 WSHVLGWLCGLSSMLCIPGYMIYIW 551


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +1

Query: 562 WTQRLGVMCQILTQSCQPHYCI-LW 633
           W+  LG +C + +  C P Y I +W
Sbjct: 580 WSHVLGWLCGLSSMLCIPGYMIYIW 604


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 614 PIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTV 727
           P  +S  W +    W L  CKL+      S Y++ +T+
Sbjct: 88  PFELSVFWQQYPWQWGLGICKLRAYVSETSSYVSVLTI 125


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/32 (25%), Positives = 14/32 (43%)
 Frame = +1

Query: 166 PQWLGSSNCNSSEIPGHALIFLSSQNSHRVEA 261
           P W+   N N + +PG  +     ++    EA
Sbjct: 579 PDWMMGGNANRNFMPGRGISKFGGEDVRESEA 610


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 283,580
Number of Sequences: 438
Number of extensions: 6357
Number of successful extensions: 39
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43102617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)