Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_A12
         (1237 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1008 - 7987936-7988628,7988923-7989102                           38   0.022
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     30   4.3  
12_01_0816 + 7502669-7503145                                           29   7.5  
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254     29   7.5  
06_02_0194 + 12885340-12885708,12886098-12886367,12886476-128865...    29   10.0 

>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 37.5 bits (83), Expect = 0.022
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -1

Query: 295 RKRHASRREKGGQVSGKRQGRNRRAHRGSFQGETPG 188
           R R   RR  GG+V+G+   R+RR  RG+++GE  G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274


>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 207 SRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 88
           SRGK L+S  + R  PP   + + V+ + GGG  G  P T
Sbjct: 25  SRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>12_01_0816 + 7502669-7503145
          Length = 158

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 392 RRSGRAERGVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERR 261
           R SG  +R V    PAW ER   + ++ +V  E+A      ERR
Sbjct: 8   RSSGEGDRPVARWWPAWQEREKESLESSAVEGERATAEVGSERR 51


>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
          Length = 425

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 571 QQSADTKYCSSSVAVVRPPLQELCSTAYIPRSA 473
           Q S   K   SSVA   PP + L ST  +PR++
Sbjct: 176 QNSIAAKLACSSVAAASPPPRNLVSTTPVPRNS 208



 Score = 28.7 bits (61), Expect = 10.0
 Identities = 24/71 (33%), Positives = 30/71 (42%)
 Frame = -1

Query: 670 RNLLLANKKTTATSGGLFAGSRATNSFSEGNWLQQSADTKYCSSSVAVVRPPLQELCSTA 491
           RN + AN    A+S    A     N  S       S      SSSVA   PP + L ST 
Sbjct: 206 RNSITAN---LASSSVAAASPPPRNLVSTTPVPHNSIAANLASSSVAAASPPPRNLVSTT 262

Query: 490 YIPRSANPVTS 458
            +PR  NP+ +
Sbjct: 263 PVPR--NPIAA 271


>06_02_0194 +
           12885340-12885708,12886098-12886367,12886476-12886592,
           12888044-12888094,12889599-12889719,12890146-12890311,
           12890598-12890691
          Length = 395

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = -2

Query: 660 CLQTKKPPLPAVVC-----LPDQELPTLFPKVTGFSRAQIPNTVLL 538
           CL  ++PP PA +C     LPD +  T+   +  F R      VLL
Sbjct: 46  CLALRRPPPPAELCVLLNDLPDNDFATVVKSLVEFRRNNGDEPVLL 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,969,330
Number of Sequences: 37544
Number of extensions: 653414
Number of successful extensions: 1982
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1980
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3806166204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)